Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016549 |
| length | 1175 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 2 |
| gene id | XLOC_008207 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 781717 ~ 787548 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-131121-32 | Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000155114 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018744 | lncRNA | upstream | 15714 | 768181 ~ 768435 (+) | True | XLOC_008206 |
| TCONS_00018864 | lncRNA | upstream | 114705 | 658362 ~ 669444 (+) | True | XLOC_008204 |
| TCONS_00018863 | lncRNA | upstream | 236268 | 546153 ~ 547881 (+) | True | XLOC_008200 |
| TCONS_00018862 | lncRNA | upstream | 284326 | 497208 ~ 499823 (+) | True | XLOC_008197 |
| TCONS_00018743 | lncRNA | upstream | 712244 | 63799 ~ 71905 (+) | True | XLOC_008193 |
| TCONS_00018745 | lncRNA | downstream | 37161 | 823442 ~ 826975 (+) | True | XLOC_008210 |
| TCONS_00018746 | lncRNA | downstream | 421439 | 1207720 ~ 1211561 (+) | False | XLOC_008224 |
| TCONS_00018748 | lncRNA | downstream | 421439 | 1207720 ~ 1220123 (+) | False | XLOC_008224 |
| TCONS_00018747 | lncRNA | downstream | 421439 | 1207720 ~ 1220123 (+) | True | XLOC_008224 |
| TCONS_00018749 | lncRNA | downstream | 435536 | 1221817 ~ 1234693 (+) | True | XLOC_008225 |
| TCONS_00016547 | mRNA | upstream | 62591 | 714203 ~ 721558 (+) | True | XLOC_008205 |
| TCONS_00016546 | mRNA | upstream | 140678 | 638457 ~ 643471 (+) | True | XLOC_008203 |
| TCONS_00016543 | mRNA | upstream | 146987 | 618081 ~ 637162 (+) | False | XLOC_008202 |
| TCONS_00016550 | mRNA | downstream | 4939 | 791220 ~ 805111 (+) | True | XLOC_008208 |
| TCONS_00016551 | mRNA | downstream | 21616 | 807897 ~ 814805 (+) | False | XLOC_008209 |
| TCONS_00016552 | mRNA | downstream | 22366 | 808647 ~ 822157 (+) | False | XLOC_008209 |
| TCONS_00016553 | mRNA | downstream | 30275 | 816556 ~ 822471 (+) | True | XLOC_008209 |
| TCONS_00016554 | mRNA | downstream | 37156 | 823437 ~ 827462 (+) | False | XLOC_008210 |
| TCONS_00016581 | other | downstream | 292708 | 1078989 ~ 1079104 (+) | True | XLOC_008218 |
| TCONS_00016597 | other | downstream | 757405 | 1543686 ~ 1543768 (+) | True | XLOC_008229 |
| TCONS_00016598 | other | downstream | 757576 | 1543857 ~ 1543943 (+) | True | XLOC_008230 |
| TCONS_00016599 | other | downstream | 774384 | 1560665 ~ 1568342 (+) | True | XLOC_008228 |
| TCONS_00016606 | other | downstream | 1087377 | 1873658 ~ 1873778 (+) | True | XLOC_008236 |
