RNA id: CI01000057_03326630_03330891.mRNA


Basic Information

Item Value
RNA id CI01000057_03326630_03330891.mRNA
length 2835
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000057_03326630_03330891
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3324719 ~ 3331089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAATGCAGTAACCACACTCAACCACATTGCAACACATAACCACACTGTAAAAAAAAGAAACAAATTTACACAGTAAAATACTGTTTTCAATTGAAACAGTATTATACCGTAATGCATTCTGGGTAATATTTGTTGTTTTCGAGAAAGCATCCTATAGGTTACTTTTTCGAAAACGACAAATAATATTACCCAGAATGCATTTTTTTACGGTATAATACTGTTTCAATAGAAAACGGTATTTTACTGTATAAATTTGTCTCGTTTTTTTACATTTATTTTTTTGTTGTTTAGTTGTACAAATAGGATAGTTGGTCGGTGTAGTATTTGTCCCGCTTCTCCTCCATTGTGATTGGACGGCTGGGTAAAAAGTGACAGTGACGAGACCTGCATTTTACCCAAGGTTGAACAGTTTAAAAAAAAAAAGGGGCAAGCGAACTCGTGAAATATTATTACAGTATATAGTGCATCAAAATGCAGTCATCAGTTTGCATAAACAAACACAGAATGTTCAAATGTTTTACACAACATTTACACGTGGTAGGGACAACATGTCTTCCAACCAATATGCCCATATAGGTCGTTTGTCACTTCCCTGAAATATAAACCATAGGAGCGTTTATTAAAGTTGCGCCCCTATCGACAACAGGACACTTTCATGTTAATGCATGAAATACGACCCATAGGAGCGTTTACTAAAGTTGCGCCCCTATCGACAACGGGACACTTTCATTTTAACTTTTATCTGCACTGGTAGAGCATTGCAATATACAACTATATGCATCATGTGATTATACGAATGTGGGTTCGATCCCAGGGAACACATGTGCTCATAAAGTGTATATGCACTATAAATCACTGAGGGTAGGTTTAGGGTTGGGGTAGGTGTAGGTGTAGTCGTTAATAAAAAAATGAGTTTTGCTAAATGGAAATAGGACAAATGGCGGGTAAGGGATTTGTAAAAAGTCCACACATTGCATTTAAATGAACACGCATTTTGATTGGTAACGACGGTCATACGTCATTTCCTGACGACAGATGTAACACGACACTGTAATTATTTTTATGCCACCTAGAGGGCGCATGACTTTAAAACGTAAATATAGGTCATAATAAGGTGCTTGAAAAAAACGTCCTATAGGGTCATTTTTTGGAGGAGGACAGTCTCGGTAGGGAGCAGATGTACATTTCTTTCATTCCAACTAACATCTAAACATCTAAAATTCAGATATGGTAATAGGCGTTTTGTTTCCAACACGCGCTGTAAGCGATCGACCAATCACAACAGATTGAGCCATCTGACCAATCAGAGCAGAGTAGACCAATCACAACAGACTGAGCCGTCTGTCTCTTTGTTTGGATCTCTTTGTTTAGATAATATGTATATTTTTTTGTAAAATATAATAACATTTTTACCATGTGCTTATTATTATTTAAAGAGTATGGTCAAAGTGAAAGTCTTATTCTTTGCATCTATTAGCATATATTTGTAATTAAGTAGTAAAGGGCTCCTGAGTGCTTCTTTTTTTTATTATTGTTCTTATATAATGTCTGTCCAATGTCAAGAACTGCCAAGTCGAGTTCTTCAGAGGAGTAATCTTTCCTAGCCAATAAAAATCTCTTTTGTTCTACACTGACAGCACACTTCAGTTTAAGAAGGAGCCTTTTAATGTCATGTCCTCCTCTATCAGTATTACTGATTCATTTATCTTTTTTCATTGAAAAACAGGCAGTAAGACTGATGGATAGGTTGGGACAATGGCATAAGGACAAACACACACATAAAAGAAGAAAAAAAAAACCCTCAATGGCATTTTTAATGAATAAATACTATAGAAATATACAACTGTTCAGAAAATGCAGTTATTCAATAAGCAATTCTGAAATGAATAAGACAGGGTTAAGCTTATGAACGATCTAGTCAATATAGTGACTCATTTTTATATTGTCCCCTTGACATGTTTCTCTTCTGGACTACAAGCTCAGCCATTTGAAAGAGAAAAGAAAAACTGTTTCCTTTGGCTTGGTCGAACTTCAAAAGAAAAAAAAAATCTCTCCAAAGGACTCACTAAAGGAGGCGGCCGAAATACCTTAAAGCGTGTCCAGTGCGTTTGCATTGCTTGTTTGTGGGAGTTTTTTGTTCACCAGGAGGATAACTCTGTCAACAGTTGCCTTATTCCAGATCTCCATGTATACAGTGTGACATGCGGAGGCTACTGCGACCGCGCTGCTGCTGCTGGTGGATTCCGCCTCTGCTTTTCTCCACGCTCGTGCTCCGGTGGGCACATTGTCATCCCGGCGTCAAGTCTAATGTATAATTCTAGAGAGTATGACATTCTCAGGTCTTCGAATCAAACCTTATGGAAGCAGAACAAGTGCAAGGACTGTTTGTGCTCTTTTAACCAAATCTACACAGATACATGTGAAACAAACGCGGGTCTTTTTAACCTCGGTGACATTTGTTCTGTGTCTGATAGACCTGTTCTTAGCAGAGCCACTGCTGCGGAAAGACAAGCGAGCTCTGTATCCGCCGCCGCTGCAACAGTGACATACAGCAATGTGCTAGAAAAAGGGAACAGTGCAACTTTATTTATTTCTGTCATGCCAGTGGGAAACAAGTGTCTGCACACTTGAGTCTCCAGTAATGGCCAGTTTGCTGACGGTGCAGGAGCGGAAGCGGCGAGAGGGAGGGAAGGATCTCTCGGCGGGGCGTCTGTTGGCCCCAGGCAACGCTCATTTCTCCACAGACGGTTGATCTAGCCGTTGGAGCGATGCATGACTATCACGGAAGAGAAAATTCTAGCGCCGTTTCCACCTAATAATTTAAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278353 lncRNA upstream 240348 3013131 ~ 3084371 (+) False G245199
TU278356 lncRNA upstream 240348 3013131 ~ 3084371 (+) True G245199
TU278357 lncRNA upstream 283665 3018556 ~ 3041054 (+) True G245200
TU278348 lncRNA upstream 316795 3007677 ~ 3007924 (+) True G245196
TU278347 lncRNA upstream 319709 3004792 ~ 3005010 (+) True G245195
TU278525 lncRNA downstream 6172 3337261 ~ 3352596 (+) True G245360
TU278597 lncRNA downstream 352065 3683154 ~ 3683354 (+) True G245428
TU278523 lncRNA downstream 375268 3706357 ~ 3706854 (+) True G245358
TU278514 lncRNA downstream 376739 3707828 ~ 3708448 (+) True G245349
TU278599 lncRNA downstream 433222 3764311 ~ 3764625 (+) True G245430
CI01000057_02884788_02888727.mRNA mRNA upstream 435914 2884081 ~ 2888805 (+) True CI01000057_02884788_02888727
CI01000057_02794112_02799150.mRNA mRNA upstream 525566 2793991 ~ 2799153 (+) True CI01000057_02794112_02799150
CI01000057_02758170_02782493.mRNA mRNA upstream 542153 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
CI01000057_02707814_02708251.mRNA mRNA upstream 616345 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02693930_02700711.mRNA mRNA upstream 624008 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_03496993_03600733.mRNA mRNA downstream 165904 3496993 ~ 3600733 (+) True CI01000057_03496993_03600733
CI01000057_03611693_03627832.mRNA mRNA downstream 280604 3611693 ~ 3628414 (+) True CI01000057_03611693_03627832
CI01000057_03636623_03639946.mRNA mRNA downstream 305534 3636623 ~ 3640129 (+) True CI01000057_03636623_03639946
CI01000057_03652858_03668897.mRNA mRNA downstream 321717 3652806 ~ 3669092 (+) True CI01000057_03652858_03668897
CI01000057_03669937_03677055.mRNA mRNA downstream 338321 3669410 ~ 3677881 (+) True CI01000057_03669937_03677055
TU278389 other upstream 32157 3087096 ~ 3292562 (+) True G245231
TU276930 other upstream 672159 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 747867 2576453 ~ 2576852 (+) False G243975
TU276910 other upstream 747867 2576470 ~ 2576852 (+) True G243975
TU276844 other upstream 928237 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU278566 other downstream 206480 3537569 ~ 3538442 (+) True G245401
TU278506 other downstream 510939 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 878808 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 1767596 5098685 ~ 5101450 (+) False G245725
TU278935 other downstream 1767596 5098685 ~ 5103606 (+) True G245725

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU61753 True 2987 lncRNA 0.46 2 CM030126.1 2054515 ~ 2066295 (-)
tiger barb (Puntius tetrazona) TU61753 True 306 lncRNA 0.39 1 NC_056704.1 1559719 ~ 1560024 (-)