RNA id: CI01000057_03669937_03677055.mRNA


Basic Information

Item Value
RNA id CI01000057_03669937_03677055.mRNA
length 2481
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000057_03669937_03677055
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 3669410 ~ 3677881 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATATATAACTGGCAAGCCTTTTGGAAATGCAATCTTTTGCAAAAAGCATTGAATTTTTCCTCCCGTATTTTAAATCTCCCGCAATAATAATAATACACATATTTTATTTATTTAATAAAAACAAGATATACAGTTAACACAAAAATATATTTACTACAGTTACTATACAACCATAATAAATTAATATGGGAACTCCTTCAGACAGTGTAAGGAGCTTAATTTTTGATGACCGTGGTAGCTAAATACCAGTTTTACTGTTGAGTTACACTATTAAATTGATTTGTACGGTAGTTGGGAATAATATATATTACACTTGTTTACATTTTAAGAGAGCACATTACGTGAATAATTCACTTGCGTGCAGCTCTTCAAAACCCGATGTAAACAGTACACCTCTATCAAAAACTCTCTCCGCCGGTTACCATGGTGAATCTTCGTAGGGGCGTGACTTTAGCTCTGTCACGTGACTCTTCCAACAGCGATTCCTCCAGAGTAGCTCGCTCGCGTCGTGGCTTGCGCTGAAAGATGGCCGCGGTGGAGCAGCGCCCGCCCGTGCGGGAGGGAATGCGGATCGCGGTGCTGTGCCTGTTCTGGTACACCGTCAGCTCGGGTGGCAACGTGATTAATAAAATCATCCTCAACGGCTTCCCCTATCCGGTCACGGTCTCTCTTTTCCATATCCTTTCTATCATCGTGTTTCTCCCGCCGCTGCTACGAGCCTGGGGCGTCCCGCGAGTGGAGGTACCGGCCCGCTACTACCGCTGGTACATTCTGCCGCTCGCCTTCGGGAAATACTTCGCCTCCGTCTCGGCCCATTTCAGCATATGGAAGGTTCCGGTGTCGTACGCGCACACCGTGAAGGCCACCATGCCCATCTGGGTGGTTCTGCTGTCACGGATTATCATGAAAGAGAAGCAAACCACAAAGGTTTATGTGTCTCTGATCCCCATCATTGGAGGTGTCCTGTTGGCCACTGTCACTGAATTGTCCTTTGACGTCTCTGGATTGATCAGCGCTCTGGCAGCGACGCTCTGCTTCTCTTTACAGAACATATTCTCCAAAAAGGTCTTGCGTGACACAAGGATTCACCACCTCCATTTACTGAACATCCTGGGCTTCAATGCACTTTTGTATATGCTGCCTACATGGATTTTAGTGGACCTCTCCTCCTTCCTGATGGATGGAGACCTGATGGAGGTTTCCAACTGGACGGGAACAATTGTGCTGCTCCTCATCAGTGGTGTCTGCAACTTTGCACAAAACATGATTGCTTTCAGCGTGCTGAACCTGGTCAGCCCACTCAGTTACGCAGTAGCCAACGCAACAAAGAGGATCATGGTCATCAGCATATCCCTACTGATGCTCAGGAACCCCGTCAGCACCACTAACATCATTGGCATGATGACAGCAATACTAGGTGTCTTCCTCTATAATAAGGCGAAGTATGACTCCAACCGGGAGGCCAAAAAGACACCGCTGCCAGTTTCAACACAGGATATGGTGTCATTCGACAAGCCCCAGTCCAACGGCACCGGGCCCTTCACACACAGCTCAGACTTTCAGTACGGTCGGAGCACAGTACTCACCGACCACTTTCAGTACAGCCGACAGGCCTACACAACGAATTACAGCTCCAATCAGTATGTTGTGTGAGTGGAGCACTTCGGAGGACTCTATAGACTGTTCCCAGACTCCCGTGCTTCAGAGGATGCATCTTTCATACGAACAAGGAAGTGTCGAATTGACTGGAAAAGGAATGTTTACTCACAGAATCCTACTGCTTTTTCTTTTTTCTTTTTTTTTTTTCCCCCACAGGCCTGTTATTTATTTCATTACAAACCTTATGTTGTGTTTTCACATTTATTTTATGAGGAAATTCTCGGTGGTATGTGTAGGCTATAGGAAGGTGCTGGGAACTTTTTTGATTATTTTTGCACAGCATGCATTTTAATGCATTTCAGAATGTAGCGTCTTCATCGCCATCATGCTACTGCGAGTGAGGGACAGACAGACAAGCAGTCATATAACATACACTGGGTCACTGCATATACAACTGCATCAGGGTATTAGTCAATGTTCTTATTTTGCTTTTTATTTGTAAATATTTTATTTATTTTTATAGAGGAAGGTGCATTGGTTGACCATATCATGGACTGAAAACACCCCTTTGAATTTTTGAATGTTTTCTGAGAGAATCACTTTTTTCCCTCCTGAGGTGTTTAAATCAGACAGAGGTCACTGTACAAGATCACTTGAATCATGGTATACATTCATATGCATGATTATTATTATTTTATGTATCTTTACTTTTTGTACTGAAGGGGACTTGTCAGATACAATGGCCATAACTTATAGGTCAGTTTAATTAATATTGGATGAGAAGGTTCGTAGAACACTTTATTTATTTTTTCTTTTTTTCTTTCTGGAAGTTGACATTCTTTACAGTTAAATTTGTTTAAATTCCTCAAACTGCAGTCTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15283 SLC35E1; solute carrier family 35, member E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278525 lncRNA upstream 316814 3337261 ~ 3352596 (+) True G245360
TU278554 lncRNA upstream 342240 3326786 ~ 3327170 (+) True G245389
TU278353 lncRNA upstream 585039 3013131 ~ 3084371 (+) False G245199
TU278597 lncRNA downstream 5273 3683154 ~ 3683354 (+) True G245428
TU278523 lncRNA downstream 28476 3706357 ~ 3706854 (+) True G245358
TU278514 lncRNA downstream 29947 3707828 ~ 3708448 (+) True G245349
TU278599 lncRNA downstream 86430 3764311 ~ 3764625 (+) True G245430
TU278522 lncRNA downstream 137752 3815633 ~ 3816359 (+) True G245357
CI01000057_03652858_03668897.mRNA mRNA upstream 318 3652806 ~ 3669092 (+) True CI01000057_03652858_03668897
CI01000057_03636623_03639946.mRNA mRNA upstream 29281 3636623 ~ 3640129 (+) True CI01000057_03636623_03639946
CI01000057_03611693_03627832.mRNA mRNA upstream 40996 3611693 ~ 3628414 (+) True CI01000057_03611693_03627832
CI01000057_03496993_03600733.mRNA mRNA upstream 68677 3496993 ~ 3600733 (+) True CI01000057_03496993_03600733
CI01000057_03326630_03330891.mRNA mRNA upstream 338321 3324719 ~ 3331089 (+) True CI01000057_03326630_03330891
CI01000057_03692584_03701758.mRNA mRNA downstream 14703 3692584 ~ 3702032 (+) True CI01000057_03692584_03701758
CI01000057_03709399_03714556.mRNA mRNA downstream 31063 3708944 ~ 3714559 (+) True CI01000057_03709399_03714556
CI01000057_03719251_03750681.mRNA mRNA downstream 41370 3719251 ~ 3750801 (+) True CI01000057_03719251_03750681
CI01000057_03752329_03758938.mRNA mRNA downstream 73523 3751404 ~ 3759109 (+) True CI01000057_03752329_03758938
CI01000057_03790271_03807327.mRNA mRNA downstream 112308 3790189 ~ 3807327 (+) True CI01000057_03790271_03807327
TU278566 other upstream 130968 3537569 ~ 3538442 (+) True G245401
TU278389 other upstream 376848 3087096 ~ 3292562 (+) True G245231
TU276930 other upstream 1016850 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 1092558 2576453 ~ 2576852 (+) False G243975
TU278506 other downstream 164147 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 532016 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 1420804 5098685 ~ 5101450 (+) False G245725
TU278935 other downstream 1420804 5098685 ~ 5103606 (+) True G245725
TU279053 other downstream 1896023 5573904 ~ 5579843 (+) True CI01000057_05564489_05579041

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006261 True 5014 mRNA 0.40 6 NC_007122.7 5499661 ~ 5515922 (+)