RNA id: TU276790



Basic Information


Item Value
RNA id TU276790
length 4177
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id G243874
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2438184 ~ 2455117 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAATACCTTTATTTGTCATTCACTTTGATACTTGACACTTTGCAGAACTTTTACATTGCTGTATTACATACTGCATGAAAGGTAGTATTCAAAAGCATAATGTGCATTAAATTTCACACGTGTTTACATTTCAATCTTTTTTTTCTCATTTATATATATTTCAGGTTCATATAGTGTTGTCATGATCATGATACTGGAATTTCTAACTTCGATACAATACAAATCAATACAAAATATTGGAAATAATGCGAAAGTGAAAATAAAACGTATCCCAAATTCTTGTTAAACTCACAGCACATACAGAGACGGATTTTGCTGCATTTACTGAGCTGAAAACACCGGATCATGAGCTGCTTGCGTGTGAACCCACAGTGCCATGCTTCACTCTGAAACATGCACCAAAGATGCTGATCATATACTTATTTAAAAGAAGTTTGCCAAGCAAGTTTTGTTTCATTTGATGGACTTTTGCTGACAAATAAATGGGGAGATCTAGGTGCAGCTAACATGAAGACAGAGTATTTCTTGTTCATTTACGTATACAAAGCTCAGAAAATCAGCAAACTATCAACTCACTGACCGAGAGAAGAGAGAGCAAGAAAGCTCAGCTGGTATTAATGTATTGAAAATGAGTATTTCAAATATTTCGTTACAGATATCTATTGAAAAATCAATATTTTGACAACACTAGTTTCAAGTACAAATTATCTGTTAACATTACATTTAAAGGCTGATGGCCTGATAATTTTGATGATGACATATTCATATTTTCATCTCTTAAATTTTCCTCTTATCATCTGTTTGGTAATGGTTGTTAATCATCGTTTTGTCTGGTTTGGAGGCTCATTGTTAGATTGTCTTGAAGAGACCAGAGACGATATAGTCTGAGTGAACGCCATCAAGCAGTCCGGCGCCGTTATTGTGAATGAACCAACAGGGCACTTGTTCTCCTTTCTTCACATCTTGTCTGAAATCTCTCTGCCAACCCCTGTTGACACAGAATAATGCAGTGTAATAACATCGACCCTTTCATGTTCAATGCAGGGGGAAACTGTACAGTGTCTTAAATTCACCTGGTAACTACAAGCTCTCGTCCCTTTACAAACATCATGGCATCTGGTTTGTTTGGATCCTTTCCTGGAAACGGCTCACTCACTTCAAACTCCAATCCATGGTAGAACTGACCTAAAGAGCCAAGCAGGCCGTGGACATTGCTTGAAAAGAGGTGACTGTCCAGAGTGTAGAACCCGAGGTAGTCTTGATGATACGGATGCTTCTGCCAGACTTTGTGCAGGATAATAAGAAACTTGACTGAGTTCCTCAAAGTCACTGTTAAACTGCGATCTTTGATCACGTGCAGATCCATGTGGGCCCTTTAACCGTGGCAGTATCAGTCCAGAAGAATTTTGCTTGTTTTCCCTCATCAGATACTGAGATCTCTTTTGTGCTCACCATCAATCTGATACCAAACTTCTCATGAACGATTCCAAAGCTCCCAAAATAGGTGTTTACTTTTTCTCCAGGGATGACCTTCTTATCGCCAATGGTTTGGCCATTGACCACAATACCTGTGGAACACCAAGGAACCAAATAAAAAACACTAAAACATTAAACTTCAGAATAGCTCAGAAGATAACAACAGATATATTGACCTCTTGTAATCTGTCATTGGGGAGTAGCTACTTTGGGGAGTTTAAGTCTCTGATTTATTGTCCAAAGCCTGTAAACTTTTTGAAGTTTCATATAGCGTCAAATAATAAAGATTTTAATATAAATTTGTGCACTTTGTTCGCTCTAGCCTAATGGTGATGGAACAGTATAAAAGATTGTTTTCGATTTAAAAACATGTTAAAGACAGTTGACTGTCATCTGCTTTTTCAGCTTATCTGGAAATTTTTCTGGAAATGGCTAATAAGCCAGTAAGTGCTCCTCTGCCGCCATCTACTGGCTATAACGGTAATTTCATTGTCTTTTTTAGTTTTTAAATAAAAGTGTTTGTTTGCCACCAAGTGTTTGCCACCAAATTTTAGTTTTACAAATGAAGACAATCTTTGAATGATGAACAAATAATGTTTTTGATAATCACATTAAAAATAACATTTAAATTGGACAATATTTAGAGCTTTGAAGTACTAGGAAAAAGAGTGAAGCATGTGAAAATCCTTGAAAAGTGCTTGAAATTCATTCTCTGATATCTGTGGTTTATAACCGAGTATTCATCACCAAATTTGAACGCTTCTCACTAGATTTCGCAACAATGTTGTGAGTTTAACAAGTAAAAGCTTTTAAAAGTCACAAGGGGGTATTACCGATGTATTTTGTGTCATAAATTCACATTATTTTATTTCATTCTAATGAAACAGCCGTGAGTGCTGAATTACTTCTCGTACAGGTTACTCATACAGTTTATTTAGCAAATTAAAATTTGCGGTAAATAACGAAAACAAGAAATTCAAACAATAAGACTAACCGTGTTGAATTATATAACAATTATTAGTTTTCTGTCGATAAAGGTATCCAAACAGTTGCTCAGCTTTCTAATAAAACACAATATATTAAAGCATCTGTGGTGTTTCCATGGTTTCTATGGAAGTAAAACCGGAAATCGAGGGTAACACGGATATGATGACAGGTGACGCAACAAGGAGGGATGTTATACTGGTTAAAATAGCTAATTTCTCTGGAATTAAATATTGTTGGAAACATTTGGGATAATGTAAGTACACTAGTCAACAAAATATATAACACTGTGCTAGCGATTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAACAGGCAGTGAGGGCAAGGCGCACACGCACACACACACACACACACACACACACAAAAACAAAGCAAAACAAAACAAAAAAGCCCTACATGAATCAGTCCCAACATGCTTTGCATGGGACTGCATTAGGACAGTAAATTAAGCAATGAAGTGTTACGTGATTAGAGTAAAGGGAAAGTCTTGTACTGTACTGTAATGTACTGTGTACTGTTATGTTAGAGATTTTGTTGTTACCATTTTGCTGAAGAATGGAGCTTGCAAAGCTGACAGCTTGGGAGAGTCACAATTCTAATAAAAATGTCTAATAGTTTACACCTGTTAGATTTGATATGAATCAATAATGCCAGAAGGGGGAATATTTACTATAGAAAAACTGTGTTCTTTTAAAGCTATGCCTTGTGGAATGTTAATGCACTTTTCTGCTAAAATAGCAAGTTGTTCTTACCTGTAAGTGGGTCTCTAACCAGGTTGAAGATGGTTCCAGGTTTGTCATCAATATTGAAGCACAGAGCATCATTCTGGTTTGGCAGCTCAATGATGAAGTGTGGATCTCCATCAACTGTTACATTTGAGAAATTGTAAGAATAACACAGCTACTCCTTACCTACATTTCACATGGCCAGTGCATGGTTTTTACATTTACCGTAATATGTAGGTGCATAGCTCTTAGGGGTGTGGCTGACTGGTATAGCCGAGTAACCTGCAAATAAGATAAAATAAAAAATAGTTCACTTGGTTTTACATACTGTCAAATATAAAAGAAAGCTCTGAAACTCTTATTTGCACATTAGTACACTACAGTCTGTCTGGCCAATTAGATTTCGCTATGGTGATAAAGGGTAGGGTCATGATTTTTCGGTAGTTCAGCTGCACTGTGAGTGTGTTTTAGCACCATTTGTTGTTTGCTTTTGGAATCTAAAGGAGCGGAAACTGTGATAGTGACGTCAGACTTAACCAGATTTAATAAGTGCTTGTGAAATGGCTTACCATATTTTTGAGCTTTTCCTCGTTCCTCTGTGAATCAGTGTTGAGAAAAAAGTAAGTGTCATATAACTGAGTAAACATTTACAAAATCATCGAGAACACCTTTGAGATTTATGTGCCATTTCCATGACTTTTTGCAAACTTCTGTTTGCTATTTGACAGTTTAGTCATACCTTCAGTCAGCTTGTCTGCAGTGAATGTGTTGTCGTTGGTCTCATCATCAGGTTTGGTGACGACCATGGAGGTAAGCGGTGTAACAAAGTTGTACTTTAATGAAAGGCTCAAAGCATCAGCAGTGGCATTTCCTTTCTCCTCTGGTGTACCTTTGTCTCTGTTAGAAAATATTTTTGTAATTGGGTTTAATTCAAATCTTCTCGTTAAAAAATTATGAATGAAGTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU276798 lncRNA upstream 5994 2431886 ~ 2432190 (+) True G243876
TU276799 lncRNA upstream 10610 2423960 ~ 2427574 (+) True G243877
TU276848 lncRNA upstream 35747 2402181 ~ 2402437 (+) True G243924
TU276797 lncRNA upstream 53912 2375977 ~ 2384272 (+) True G243875
TU276824 lncRNA upstream 93498 2344420 ~ 2344686 (+) True G243902
TU276864 lncRNA downstream 57115 2501533 ~ 2501909 (+) True G243933
TU276906 lncRNA downstream 126137 2570555 ~ 2570798 (+) True G243973
TU276921 lncRNA downstream 147080 2591498 ~ 2591769 (+) True G243985
TU276922 lncRNA downstream 147715 2592133 ~ 2592371 (+) True G243986
TU276925 lncRNA downstream 152287 2596705 ~ 2681817 (+) False G243989
CI01000057_02416295_02420310.mRNA mRNA upstream 17642 2416295 ~ 2420542 (+) True CI01000057_02416295_02420310
CI01000057_02412538_02415631.mRNA mRNA upstream 22251 2411516 ~ 2415933 (+) True CI01000057_02412538_02415631
CI01000057_02395285_02396439.mRNA mRNA upstream 41623 2394988 ~ 2396561 (+) False CI01000057_02395285_02396439
CI01000057_02347155_02370642.mRNA mRNA upstream 67520 2347155 ~ 2370664 (+) True CI01000057_02347155_02370642
CI01000057_02244141_02246824.mRNA mRNA upstream 190555 2243793 ~ 2247629 (+) False CI01000057_02244141_02246824
CI01000057_02548444_02558549.mRNA mRNA downstream 103477 2547895 ~ 2559692 (+) True CI01000057_02548444_02558549
CI01000057_02618561_02619733.mRNA mRNA downstream 174002 2618420 ~ 2619771 (+) True CI01000057_02618561_02619733
CI01000057_02693930_02700711.mRNA mRNA downstream 249512 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_02707814_02708251.mRNA mRNA downstream 263396 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02758170_02782493.mRNA mRNA downstream 313752 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
TU276844 other upstream 41702 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276421 other upstream 1479813 956063 ~ 958371 (+) True G243558
TU276419 other upstream 1482989 954843 ~ 955195 (+) True G243557
TU276323 other upstream 2017674 420156 ~ 420510 (+) True G243476
TU276911 other downstream 132035 2576453 ~ 2576852 (+) False G243975
TU276910 other downstream 132052 2576470 ~ 2576852 (+) True G243975
TU276930 other downstream 190819 2635237 ~ 2652560 (+) False G243991
TU278389 other downstream 642678 3087096 ~ 3292562 (+) True G245231
TU278566 other downstream 1093151 3537569 ~ 3538442 (+) True G245401

Expression Profile