RNA id: TU278284


Basic Information

Item Value
RNA id TU278284
length 236
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G245145
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2925019 ~ 2925254 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACGACTGAGGCAATAAATTCATAGGTGCTCATGTTTCCTCAATATCACTTTCCATGCTGTTATTATTTGTATAATTCCTATGACTAACAATAATTTAATAATTTAACAAAAAAATTAAAGATAGTTTAAAGGTGCAGTGTGTACATTTTAGCGGCATCTAGTGGTGAGGTTGCGAATTGCAATATAGAGAAGCTACGGTGGCCAACACAGGACAAATATGTCATCAACAGAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278246 lncRNA upstream 41307 2883474 ~ 2883712 (+) True G245107
TU278242 lncRNA upstream 48295 2876485 ~ 2876724 (+) True G245103
TU277019 lncRNA upstream 88670 2836080 ~ 2836349 (+) True G244070
TU277018 lncRNA upstream 88967 2835808 ~ 2836052 (+) True G244069
TU277017 lncRNA upstream 91719 2831350 ~ 2833300 (+) True G244068
TU278290 lncRNA downstream 3751 2929005 ~ 2931066 (+) True G245151
TU278341 lncRNA downstream 59335 2984589 ~ 2984808 (+) True G245189
TU278347 lncRNA downstream 79538 3004792 ~ 3005010 (+) True G245195
TU278348 lncRNA downstream 82423 3007677 ~ 3007924 (+) True G245196
TU278353 lncRNA downstream 87877 3013131 ~ 3084371 (+) False G245199
CI01000057_02884788_02888727.mRNA mRNA upstream 36214 2884081 ~ 2888805 (+) True CI01000057_02884788_02888727
CI01000057_02794112_02799150.mRNA mRNA upstream 125866 2793991 ~ 2799153 (+) True CI01000057_02794112_02799150
CI01000057_02758170_02782493.mRNA mRNA upstream 142453 2758170 ~ 2782566 (+) True CI01000057_02758170_02782493
CI01000057_02707814_02708251.mRNA mRNA upstream 216645 2707814 ~ 2708374 (+) True CI01000057_02707814_02708251
CI01000057_02693930_02700711.mRNA mRNA upstream 224308 2693930 ~ 2700711 (+) True CI01000057_02693930_02700711
CI01000057_03326630_03330891.mRNA mRNA downstream 399465 3324719 ~ 3331089 (+) True CI01000057_03326630_03330891
CI01000057_03496993_03600733.mRNA mRNA downstream 571739 3496993 ~ 3600733 (+) True CI01000057_03496993_03600733
CI01000057_03611693_03627832.mRNA mRNA downstream 686439 3611693 ~ 3628414 (+) True CI01000057_03611693_03627832
CI01000057_03636623_03639946.mRNA mRNA downstream 711369 3636623 ~ 3640129 (+) True CI01000057_03636623_03639946
CI01000057_03652858_03668897.mRNA mRNA downstream 727552 3652806 ~ 3669092 (+) True CI01000057_03652858_03668897
TU276930 other upstream 272459 2635237 ~ 2652560 (+) False G243991
TU276911 other upstream 348167 2576453 ~ 2576852 (+) False G243975
TU276910 other upstream 348167 2576470 ~ 2576852 (+) True G243975
TU276844 other upstream 528537 2394598 ~ 2396482 (+) True CI01000057_02395285_02396439
TU276421 other upstream 1966648 956063 ~ 958371 (+) True G243558
TU278389 other downstream 161842 3087096 ~ 3292562 (+) True G245231
TU278566 other downstream 612315 3537569 ~ 3538442 (+) True G245401
TU278506 other downstream 916774 3842028 ~ 3844691 (+) True CI01000057_03842028_03844033
TU278663 other downstream 1284643 4209897 ~ 4212081 (+) True G245486
TU278934 other downstream 2173431 5098685 ~ 5101450 (+) False G245725

Expression Profile