RNA id: TCONS_00001374


Basic Information

Item Value
RNA id TCONS_00001374
length 1796
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_000872
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58677434 ~ 58681545 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAgctgagagaaagaggagagaaaCTCCAGCCAGAGGTTTGAGCAGATCTTCATGTCCTGAAGGTGGATTGATGAGCTCTCTGTCAGACGCAGCTGATGTTTCTTGTGTTTTTCAGCGTCAGGATTCGCTGTGCGGCGTCAGAGCTCAGAGATCCAGAAACACGCAGAACTCAGAGCTCAGCCTGACTTTACTCTGTTATACTGACGCTCAGGATCATCAGAGCTCTGAGCCAGACGCTGGAGAACAGCAGACCACACTGAAGATGTGCTCCATAGGAGAGGAGGAGGACCGCAGAACCATAATGCAGAGCACAGAAAACACCACAGAAGAAGAATATCAGAGAGAgcaggaggatgatgatgatggagtgCACCAGACGCCAATGATGTGTTATGATGAACTGGACCAATACCTTAACCTGATCCAAATCAAAGAAGAAAACTGTTCAGATGAAaaacctgatgatgatgatgatgaagatcatAACAAGGatgtggatgatgatgatgatgatgatgactttGTTCCTCCAGGTTTTGCTGCTGATCCTCATTGTGATGGAGAAATGCCCTCTACATCTAAACAGCAGCCCACAGGGAAGAGTTCCTCTGGAAAACCTCAAAAGCCAAAGAATTATCACTGTGAGCAATGCGGGAAGAGTTTTAGATCACCGTCTAAACTGATGATTCACATTAGGGCGCACACTGGCGAGAGACCGTTCCAGTGCAACCAGTGCGACAAGTGTTTCGGTACAAAGTATAATCTGTTGCGCCATGTGAAAAAACACACCGAGAAAACTGACGACGTAGAGAGACCGTATCAGTGTTCACACTGTCAGAAATGCTTTGTCGAATCATATCTCTGTAAAGCTCATGAGAAAACCCACACTGGAGCGAGGCCGTATCAGTGTTCGCACTGTCAGAAAAGTTTCTGTTCCAAGTCCAACTTGAAAAACCACGAgagaattcacaccggagagaaaccgtatcaGTGTTCGCACTGTCAGAAAAGTTTCGGTACTACTTCAAACTTGAATCAACACGAGaaaattcacaccggagagaaaccgcaTCAGTGTTCGCAGTGTACGAGAGGTTTCAGTACTAAGATGCAATTGAAAACCCACGAGAGAATCCACACCGGGGAGAAACCGTATCAGTGTTCACACTGTCAGAAAGGCTTCTTCACTTTGAATGCCTTGAAAGCCCATGAAGGTATTCACACTGGAGACAGTGTGTTTCAGTGTTCGTACTGTCCGAAAATTCTCTATAGTAAGTCTGTCTTGAAAGAACACGAGTGGATGCACACAGGAGAGCGTCCGTATCCATGTTCTCACTGCGACAAGCGCTTCCGAAGTAAGTCACACCGGAGAACCCACGAgagaattcacaccggagagaaaccgtacttGTGTCCCGACTGCGGCAAGAGCTTCATGAGAAGCCTTTCTTTCAGAATTCATCTGCGAGGCCACACAGGGGAAAAACCGTACACATGCTCGCACTGTGACCAGTGTTTCACACGACCAGACACTCTACGCAATCATGAGCGAATTCACACAGGGGAAAAACCGTACCACTGCTCCGTCTGCAGCGAGAGATTCAGTTTTCCATGGCTTTTGAATACACACAAGAAGAAACACGCCGTCTCAGAATCCTCATAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158488

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003269 lncRNA upstream 8359 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00003268 lncRNA upstream 81667 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003267 lncRNA upstream 88959 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003266 lncRNA upstream 92302 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003265 lncRNA upstream 146949 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00002891 lncRNA downstream 96508 58778053 ~ 58782292 (+) True XLOC_000874
TCONS_00002892 lncRNA downstream 171625 58853170 ~ 58854124 (+) False XLOC_000876
TCONS_00003270 lncRNA downstream 171816 58853361 ~ 58854377 (+) False XLOC_000876
TCONS_00003271 lncRNA downstream 171819 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00003272 lncRNA downstream 171868 58853413 ~ 58854377 (+) False XLOC_000876
TCONS_00001373 mRNA upstream 45370 58628165 ~ 58632064 (+) True XLOC_000870
TCONS_00001372 mRNA upstream 54936 58620953 ~ 58622498 (+) True XLOC_000869
TCONS_00001369 mRNA upstream 58566 58613972 ~ 58618868 (+) False XLOC_000868
TCONS_00001370 mRNA upstream 59051 58614897 ~ 58618383 (+) False XLOC_000868
TCONS_00001371 mRNA upstream 59087 58614918 ~ 58618347 (+) True XLOC_000868
TCONS_00001375 mRNA downstream 53781 58735326 ~ 58744037 (+) True XLOC_000873
TCONS_00001376 mRNA downstream 159344 58840889 ~ 58850686 (+) True XLOC_000875
TCONS_00001377 mRNA downstream 240482 58922027 ~ 58935898 (+) True XLOC_000877
TCONS_00001378 mRNA downstream 295717 58977262 ~ 58979451 (+) True XLOC_000880
TCONS_00001379 mRNA downstream 300440 58981985 ~ 58985885 (+) False XLOC_000881
TCONS_00001335 other upstream 503845 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1322401 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3380183 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3548855 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4491278 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 449747 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000176_00062378_00087326.mRNA False 2270 mRNA 0.16 4 CI01000176 62300 ~ 88846 (-)