RNA id: TCONS_00001376


Basic Information

Item Value
RNA id TCONS_00001376
length 1043
RNA type mRNA
GC content 0.56
exon number 5
gene id XLOC_000875
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58840889 ~ 58850686 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGCAGAAGTTGAGCTACGGAAGCGGAACACATGCGTCGCTGGACGGGCGCTTTAATTCGTTTTCTTGCAGCGATAAACGCGATTACCGGACCCGGTGTGTGCGCGGTGCAGCATGGATGACACGCGGAGGATGTGCGCGTCTCTGCTCGGCTACGTGACGCTGTTATTCGGCGCCGTGAACGCGTTCAGCCCCGCGGACACCGAGTTTACGTTCCTGCTGCCCGCCGCCAGTAAAGAGTGCTTCTACCAGAGCGCCGTTCACAACGGCAGCGTCGAGATCGAGTACCAGgtgatcGCTGGAGCAGGTATGGATGTGGATTTCTCCGTCGTCTCTCCTCAGGGAATACACCTGATTTCAGAGTTTCGCCGCTCAGACGGAGTTCACATGGTGGAGCCCACAGAGGAGGGAGACTATCAGATCTGCTTTGACAACACCTTCAGCAGATTCTCCGAGAAGATGGTGTTCTTCGAGGTCATCCTGGACCATCCGTCCAATGACGCTGGAGCTGACGACGAGTGGGCGGGGCTAGGCGAGCCAGAGAGCATATTAGAATATAAGCTGGACGACATCAAGGAGTCCATGGAGACGGTCCACCGGCGTCTGGAGCGCAGTCGGCAGATGCAGACCTTCCTGCGGGCGTTCGAGGCGCGAGACAGGAACCTGCTGGAGGATAACCTGTGGCGGGTCTCCTTCTGGTCCTGCGTGAACCTGCTGGTGCTGCTGAGCGTGGCCTTCATCCAGGTGTACACACTGCGCCGGCTGTTCGACGACAAGCGCAGAGTCTACACGTAAAACACGCAGCGGGGGGACGGAGAGAGAGCAGTGCCTTCACAAACACACTGAGCTCAGACTGTGCTGGAGAGAGATCAGCGCTGCGTTTTGAACTCCTCAGAGTTGACGATTGAATGTTTTCTCCGCAGCTCTAGTGCTTTAGTCATTTCTGCTGGGGAGACGATGCTTTGGGAGATTGTGTGATGTCGGCACAAAGGGAATCTTCTGTACAGCTctgatttttttaaagacttttacacaataaaact

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1112 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in female organism. Orthologous to human TMED1 (transmembrane p24 trafficking protein 1).

Ensembl:

ensembl_id ENSDART00000098308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002891 lncRNA upstream 58597 58778053 ~ 58782292 (+) True XLOC_000874
TCONS_00003269 lncRNA upstream 171814 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00003268 lncRNA upstream 245122 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003267 lncRNA upstream 252414 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003266 lncRNA upstream 255757 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00002892 lncRNA downstream 2484 58853170 ~ 58854124 (+) False XLOC_000876
TCONS_00003270 lncRNA downstream 2675 58853361 ~ 58854377 (+) False XLOC_000876
TCONS_00003271 lncRNA downstream 2678 58853364 ~ 58854377 (+) False XLOC_000876
TCONS_00003272 lncRNA downstream 2727 58853413 ~ 58854377 (+) False XLOC_000876
TCONS_00003273 lncRNA downstream 2729 58853415 ~ 58854377 (+) True XLOC_000876
TCONS_00001375 mRNA upstream 96852 58735326 ~ 58744037 (+) True XLOC_000873
TCONS_00001374 mRNA upstream 159344 58677434 ~ 58681545 (+) True XLOC_000872
TCONS_00001373 mRNA upstream 208825 58628165 ~ 58632064 (+) True XLOC_000870
TCONS_00001372 mRNA upstream 218391 58620953 ~ 58622498 (+) True XLOC_000869
TCONS_00001370 mRNA upstream 222506 58614897 ~ 58618383 (+) False XLOC_000868
TCONS_00001377 mRNA downstream 71341 58922027 ~ 58935898 (+) True XLOC_000877
TCONS_00001378 mRNA downstream 126576 58977262 ~ 58979451 (+) True XLOC_000880
TCONS_00001379 mRNA downstream 131299 58981985 ~ 58985885 (+) False XLOC_000881
TCONS_00001380 mRNA downstream 131414 58982100 ~ 58985671 (+) True XLOC_000881
TCONS_00001381 mRNA downstream 139435 58990121 ~ 59000239 (+) True XLOC_000882
TCONS_00001335 other upstream 667300 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 1485856 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3543638 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3712310 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4654733 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 280606 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01154834_00000371_00001788.mRNA True 814 mRNA 0.53 2 CI01154834 371 ~ 2196 (+)