Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00017940 |
| length | 737 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 7 |
| gene id | XLOC_009111 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 16935390 ~ 17025212 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006897 | endocytosis | biological_process |
| GO:0006915 | apoptotic process | biological_process |
| GO:0006919 | activation of cysteine-type endopeptidase activity involved in apoptotic process | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0048260 | positive regulation of receptor-mediated endocytosis | biological_process |
| GO:0048268 | clathrin coat assembly | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0001878 | response to yeast | biological_process |
| GO:0072583 | clathrin-dependent endocytosis | biological_process |
| GO:0030136 | clathrin-coated vesicle | cellular_component |
| GO:0098890 | extrinsic component of postsynaptic membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0098793 | presynapse | cellular_component |
| GO:0032051 | clathrin light chain binding | molecular_function |
| GO:0043325 | phosphatidylinositol-3,4-bisphosphate binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0035615 | clathrin adaptor activity | molecular_function |
| GO:0035091 | phosphatidylinositol binding | molecular_function |
| GO:0051015 | actin filament binding | molecular_function |
| GO:0030276 | clathrin binding | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding | molecular_function |
| id | description |
|---|---|
| ko05016 | Huntington disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-010328-15 | Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Acts upstream of or within chordate embryonic development and response to yeast. Predicted to be located in cytoplasm. Predicted to be active in actin cortical patch; clathrin-coated vesicle; and presynapse. Predicted to be extrinsic component of postsynaptic membrane. Orthologous to human HIP1 (huntingtin interacting protein 1). |
| ensembl_id | ENSDART00000154923 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00017938 | lncRNA | downstream | 31013 | 16900902 ~ 16908130 (-) | True | XLOC_009110 |
| TCONS_00017934 | lncRNA | downstream | 241227 | 16697515 ~ 16697916 (-) | True | XLOC_009107 |
| TCONS_00019138 | lncRNA | downstream | 383970 | 16554382 ~ 16555173 (-) | True | XLOC_009105 |
| TCONS_00018821 | lncRNA | downstream | 782340 | 16153322 ~ 16156803 (-) | True | XLOC_009100 |
| TCONS_00017921 | lncRNA | downstream | 864424 | 16073966 ~ 16074719 (-) | False | XLOC_009097 |
| TCONS_00019139 | lncRNA | upstream | 176288 | 17122412 ~ 17125772 (-) | True | XLOC_009114 |
| TCONS_00017951 | lncRNA | upstream | 267938 | 17214062 ~ 17220226 (-) | True | XLOC_009119 |
| TCONS_00019140 | lncRNA | upstream | 288741 | 17234865 ~ 17252051 (-) | True | XLOC_009120 |
| TCONS_00017952 | lncRNA | upstream | 333429 | 17279553 ~ 17285143 (-) | True | XLOC_009121 |
| TCONS_00017953 | lncRNA | upstream | 433388 | 17379512 ~ 17381351 (-) | False | XLOC_009122 |
| TCONS_00017937 | mRNA | downstream | 54231 | 16873690 ~ 16884912 (-) | True | XLOC_009109 |
| TCONS_00017935 | mRNA | downstream | 66543 | 16739160 ~ 16872600 (-) | False | XLOC_009108 |
| TCONS_00017932 | mRNA | downstream | 234726 | 16564692 ~ 16704417 (-) | False | XLOC_009106 |
| TCONS_00017933 | mRNA | downstream | 259626 | 16565798 ~ 16679517 (-) | True | XLOC_009106 |
| TCONS_00017931 | mRNA | downstream | 554959 | 16377263 ~ 16384184 (-) | True | XLOC_009104 |
| TCONS_00017942 | mRNA | upstream | 31660 | 16977784 ~ 17010358 (-) | True | XLOC_009111 |
| TCONS_00017943 | mRNA | upstream | 113498 | 17059622 ~ 17071328 (-) | False | XLOC_009112 |
| TCONS_00017945 | mRNA | upstream | 116884 | 17063008 ~ 17074393 (-) | True | XLOC_009112 |
| TCONS_00017946 | mRNA | upstream | 152227 | 17098351 ~ 17099560 (-) | True | XLOC_009113 |
| TCONS_00017947 | mRNA | upstream | 182158 | 17128282 ~ 17138640 (-) | True | XLOC_009115 |
| TCONS_00017936 | other | downstream | 66543 | 16794111 ~ 16872600 (-) | True | XLOC_009108 |
| TCONS_00017917 | other | downstream | 978675 | 15959376 ~ 15960468 (-) | True | XLOC_009094 |
| TCONS_00017896 | other | downstream | 1555160 | 15383898 ~ 15383983 (-) | True | XLOC_009086 |
| TCONS_00017891 | other | downstream | 1714441 | 15221483 ~ 15224702 (-) | False | XLOC_009082 |
| TCONS_00017882 | other | downstream | 2303358 | 14635669 ~ 14635785 (-) | True | XLOC_009076 |
| TCONS_00017944 | other | upstream | 115453 | 17061577 ~ 17071246 (-) | False | XLOC_009112 |
| TCONS_00017972 | other | upstream | 1037441 | 17983565 ~ 18002215 (-) | False | XLOC_009128 |
| TCONS_00017973 | other | upstream | 1074421 | 18020545 ~ 18023109 (-) | True | XLOC_009128 |
| TCONS_00017978 | other | upstream | 1205541 | 18151665 ~ 18151780 (-) | True | XLOC_009132 |
| TCONS_00017983 | other | upstream | 1231817 | 18177941 ~ 18180824 (-) | True | XLOC_009135 |
