RNA id: TU799763


Basic Information

Item Value
RNA id TU799763
length 263
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G679072
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 1778590 ~ 1779698 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCTTCTGGCTGTCCAGCTGTTCACAGGCCCGTTGGCTCTTCCACAGGTCGCTCTGTGTTTGACGCTCTTCTCTTTCGGTTCTCTTACGCACTCTAAAATCCTCAAGTGATTTCTTCTCCACATGTTGTTTCATTTGCACTTTTCTCCGGTAATTCTGAAGTTCCTCATCTGCTTTCCTCTTCTTAAGTTCTTCCATTCCAATGCCGCCTCTGTCTGTTTTGATGTTGAGAGGAACCGGCTCAACCCGCCCAGCACCTGCAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799740 lncRNA upstream 1465 1776710 ~ 1777125 (+) True G679052
TU799760 lncRNA upstream 13052 1765310 ~ 1765538 (+) True G679069
TU799752 lncRNA upstream 42829 1735417 ~ 1735761 (+) True G679064
TU799620 lncRNA upstream 44873 1727161 ~ 1733717 (+) True G678942
TU799627 lncRNA upstream 70971 1706515 ~ 1707619 (+) True G678945
TU799770 lncRNA downstream 23707 1803405 ~ 1808055 (+) True G679077
TU799774 lncRNA downstream 29184 1808882 ~ 1809140 (+) True G679080
TU799857 lncRNA downstream 251040 2030738 ~ 2031031 (+) True G679160
TU799862 lncRNA downstream 271829 2051527 ~ 2061011 (+) True G679165
TU799899 lncRNA downstream 318843 2098541 ~ 2098808 (+) True G679202
CI01180000_01747067_01755038.mRNA mRNA upstream 23333 1747067 ~ 1755257 (+) True CI01180000_01747067_01755038
CI01180000_01576739_01578505.mRNA mRNA upstream 199184 1576739 ~ 1579406 (+) True CI01180000_01576739_01578505
CI01180000_01542059_01545609.mRNA mRNA upstream 232510 1542059 ~ 1546080 (+) True CI01180000_01542059_01545609
CI01180000_01492241_01493781.mRNA mRNA upstream 284144 1491671 ~ 1494446 (+) True CI01180000_01492241_01493781
CI01180000_01380859_01385445.mRNA mRNA upstream 392807 1380701 ~ 1385783 (+) True CI01180000_01380859_01385445
CI01180000_01828938_01830221.mRNA mRNA downstream 49240 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_01832263_01834405.mRNA mRNA downstream 52315 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
CI01180000_01865632_01870994.mRNA mRNA downstream 85811 1865509 ~ 1871089 (+) True CI01180000_01865632_01870994
CI01180000_01915282_01926129.mRNA mRNA downstream 135194 1914892 ~ 1926269 (+) True CI01180000_01915282_01926129
CI01180000_01942458_01949580.mRNA mRNA downstream 162429 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
TU799630 other upstream 222439 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 622918 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 712499 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1626938 147934 ~ 151652 (+) True G678440
TU799769 other downstream 15472 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 609169 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 910064 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 914709 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1773579 3553277 ~ 3563250 (+) False G680723

Expression Profile