Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU799770 |
| length | 1143 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 2 |
| gene id | G679077 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01180000 |
| NCBI id | null |
| chromosome length | 11503085 |
| location | 1803405 ~ 1808055 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU799763 | lncRNA | upstream | 23707 | 1778590 ~ 1779698 (+) | True | G679072 |
| TU799740 | lncRNA | upstream | 26280 | 1776710 ~ 1777125 (+) | True | G679052 |
| TU799760 | lncRNA | upstream | 37867 | 1765310 ~ 1765538 (+) | True | G679069 |
| TU799752 | lncRNA | upstream | 67644 | 1735417 ~ 1735761 (+) | True | G679064 |
| TU799620 | lncRNA | upstream | 69688 | 1727161 ~ 1733717 (+) | True | G678942 |
| TU799774 | lncRNA | downstream | 827 | 1808882 ~ 1809140 (+) | True | G679080 |
| TU799857 | lncRNA | downstream | 222683 | 2030738 ~ 2031031 (+) | True | G679160 |
| TU799862 | lncRNA | downstream | 243472 | 2051527 ~ 2061011 (+) | True | G679165 |
| TU799899 | lncRNA | downstream | 290486 | 2098541 ~ 2098808 (+) | True | G679202 |
| TU799901 | lncRNA | downstream | 291643 | 2099698 ~ 2106093 (+) | True | G679204 |
| CI01180000_01747067_01755038.mRNA | mRNA | upstream | 48148 | 1747067 ~ 1755257 (+) | True | CI01180000_01747067_01755038 |
| CI01180000_01576739_01578505.mRNA | mRNA | upstream | 223999 | 1576739 ~ 1579406 (+) | True | CI01180000_01576739_01578505 |
| CI01180000_01542059_01545609.mRNA | mRNA | upstream | 257325 | 1542059 ~ 1546080 (+) | True | CI01180000_01542059_01545609 |
| CI01180000_01492241_01493781.mRNA | mRNA | upstream | 308959 | 1491671 ~ 1494446 (+) | True | CI01180000_01492241_01493781 |
| CI01180000_01380859_01385445.mRNA | mRNA | upstream | 417622 | 1380701 ~ 1385783 (+) | True | CI01180000_01380859_01385445 |
| CI01180000_01828938_01830221.mRNA | mRNA | downstream | 20883 | 1828938 ~ 1830814 (+) | True | CI01180000_01828938_01830221 |
| CI01180000_01832263_01834405.mRNA | mRNA | downstream | 23958 | 1832013 ~ 1834999 (+) | True | CI01180000_01832263_01834405 |
| CI01180000_01865632_01870994.mRNA | mRNA | downstream | 57454 | 1865509 ~ 1871089 (+) | True | CI01180000_01865632_01870994 |
| CI01180000_01915282_01926129.mRNA | mRNA | downstream | 106837 | 1914892 ~ 1926269 (+) | True | CI01180000_01915282_01926129 |
| CI01180000_01942458_01949580.mRNA | mRNA | downstream | 134072 | 1942127 ~ 1950647 (+) | True | CI01180000_01942458_01949580 |
| TU799769 | other | upstream | 3972 | 1795170 ~ 1799433 (+) | True | G679076 |
| TU799630 | other | upstream | 247254 | 1518353 ~ 1556151 (+) | True | G678946 |
| TU799296 | other | upstream | 647733 | 1149551 ~ 1155672 (+) | True | G678637 |
| TU799410 | other | upstream | 737314 | 1059843 ~ 1066091 (+) | True | G678751 |
| TU799069 | other | upstream | 1651753 | 147934 ~ 151652 (+) | True | G678440 |
| TU800043 | other | downstream | 580812 | 2388867 ~ 2397360 (+) | True | G679324 |
| TU801024 | other | downstream | 881707 | 2693355 ~ 2694234 (+) | True | G680192 |
| TU801022 | other | downstream | 886352 | 2694407 ~ 2695436 (+) | True | G680192 |
| TU801631 | other | downstream | 1745222 | 3553277 ~ 3563250 (+) | False | G680723 |
| TU801630 | other | downstream | 1745507 | 3553562 ~ 3563250 (+) | True | G680723 |
