RNA id: TCONS_00023806


Basic Information

Item Value
RNA id TCONS_00023806
length 1331
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_012069
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 21782043 ~ 21784152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGTAGCGGGACTTATTGCTGATCATTTTTAGAACATTTTTGAACTGTTATGAGACGAGAATGAATAATTCGGAGGACAGCGGAAGCAAGTGCTCGCCTGCCCCCATTTCAAGTTTCACGATCCAGTCTATTCTGGGCACCTCAAACGACGGAGTCCGGTCGGCTGGAAAGGACAGTCCCAAATCCCAGCCAAGGAAGCGGACGTTGTCCGTGTCGTCGGAGGATGACTGCAGCGCAGGAGAGGACTCGGGTGACTGCTACTGCTCTGAGCCTGGTGTACCAGAGTCCTGCAACCCGCACCAGCCTCTGAACTTCTGTCTCGGTGCCACAAAGGGACTTCTACCTGTGCAAGATGGGATCGACCGCCGGCCGCATTTGACACCATCCATACTACCGGATTACAAAGAGGAGCAGGGGCGAGCGTGTAGCCAAATGTCTCCCGTTTCTGAAGACAGACAACGCGACGGGCCGGACAAACAGAACAACTCCGCGAAGAAGAAAACGCGCACCGTTTTCTCTCGGAGTCAGGTTTATCAACTCGAGTCCACATTCGATATGAAACGCTATTTGAGCAGCTCCGAGAGAGCCTGTCTCGCCTCCAGCCTGCAGTTAACGGAGACACAAGTGAAAACGTGGTTTCAGAACCGGCGAAACAAATGGAAGCGGCAGCTCTCTGCAGAACTTGAAGCTGCGAACATGGCGCACGCATCGGCGCAGACTTTGGTTGGGATGCCCCTCGTTTTCAGAGAAAATTCGTTGCTCCGGGTGCCGGTTCCGAGGTCCATCGCTTTTCCTACCCCACTGTATTATCCTGGAAGTAATTTACCAGCTTTACCACTATACAATCTTTACAACAAGATTGAATATTAACTTTTGCGCACAATGAAAAATCCTTGCTAAAGGATGACACATTATTACACACACTAAGACgtacaaaatacacatttaaactaTGTTTGACGATATTCATGTCTATTTATACCTctttatttgatgaaaaaaatatatttcttattaTGCAGCAATTAAACGAGTCTACGTGTAAAACACAAAAGCAACACGGTTCTGTATATGTCCTATAAAATACACCATGTGTATAATgattattttgtacttttatttagatttatgtcCCCCGATTAACCAGTTTTACACATTATGAGGATTGAAGCATTGAAATAAAAGTGTAATCATTCGATCCCTGTCTTTAAGATGAAATCACCTGAAATTCGCAAATAGCATTCTTCATtgatataataacaattattttttaataatgttttgtctATTTAATGcagtatgttatttatttgttatttaggtCTTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0048916 posterior lateral line development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080506-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear morphogenesis and posterior lateral line development. Predicted to be active in nucleus. Is expressed in nervous system and otic vesicle. Orthologous to human HMX2 (H6 family homeobox 2).

Ensembl:

ensembl_id ENSDART00000127254

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024893 lncRNA downstream 339764 21432693 ~ 21442279 (-) True XLOC_012067
TCONS_00024892 lncRNA downstream 561564 21213422 ~ 21220479 (-) True XLOC_012063
TCONS_00024538 lncRNA downstream 863371 20900812 ~ 20918672 (-) True XLOC_012055
TCONS_00024537 lncRNA downstream 873800 20900812 ~ 20908243 (-) False XLOC_012055
TCONS_00024536 lncRNA downstream 879441 20900812 ~ 20902602 (-) False XLOC_012055
TCONS_00023812 lncRNA upstream 49582 21833734 ~ 21835452 (-) False XLOC_012072
TCONS_00023813 lncRNA upstream 55477 21839629 ~ 21842130 (-) True XLOC_012072
TCONS_00024539 lncRNA upstream 79503 21863655 ~ 21864182 (-) True XLOC_012073
TCONS_00023827 lncRNA upstream 328612 22112764 ~ 22137123 (-) True XLOC_012080
TCONS_00024894 lncRNA upstream 700653 22484805 ~ 22504384 (-) True XLOC_012082
TCONS_00023805 mRNA downstream 164425 21607239 ~ 21617618 (-) True XLOC_012068
TCONS_00023804 mRNA downstream 340579 21432693 ~ 21441464 (-) False XLOC_012067
TCONS_00023803 mRNA downstream 363703 21372291 ~ 21418340 (-) True XLOC_012066
TCONS_00023802 mRNA downstream 413268 21311401 ~ 21368775 (-) True XLOC_012065
TCONS_00023800 mRNA downstream 503461 21232819 ~ 21278582 (-) False XLOC_012064
TCONS_00023807 mRNA upstream 6454 21790606 ~ 21793113 (-) True XLOC_012070
TCONS_00023808 mRNA upstream 42673 21826825 ~ 21832190 (-) False XLOC_012071
TCONS_00023809 mRNA upstream 43153 21827305 ~ 21832119 (-) True XLOC_012071
TCONS_00023810 mRNA upstream 49567 21833719 ~ 21842135 (-) False XLOC_012072
TCONS_00023814 mRNA upstream 85892 21870044 ~ 21884323 (-) True XLOC_012074
TCONS_00023801 other downstream 501858 21279873 ~ 21280185 (-) True XLOC_012064
TCONS_00023793 other downstream 651666 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023786 other downstream 803091 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023778 other downstream 1078746 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023774 other downstream 1116117 20659871 ~ 20665926 (-) True XLOC_012050
TCONS_00023811 other upstream 49572 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023820 other upstream 218705 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023839 other upstream 1002022 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023840 other upstream 1141057 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023856 other upstream 1879059 23663211 ~ 23666478 (-) True XLOC_012099

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000312_00840984_00842545.mRNA True 1613 mRNA 0.45 2 CI01000312 840682 ~ 843043 (-)