RNA id: TCONS_00024538


Basic Information

Item Value
RNA id TCONS_00024538
length 399
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id XLOC_012055
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 20900590 ~ 20923528 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCAGCTGTGAGAGATTTCTGTCTAAAAGccacaaacaacacaattctttgggAGGAGAACAAACCATGTGAGTCTTGTAAGAGAGACATAACttaCAATCCACATACGGGATGTCTGGGTATGAAGCCTGTAAAACTGCTTAACGTCTGAGACCCTTCACTTCAAAGCTGCACATCAGTGCTTCTGTTTCGACACACAATGACTGTCTCTGAGCCTGAATCAAGTTCCTCTCATGCTCGCAGCAATAAGTTGGCCAAACTGTTGGACAGATTCCCTCCTCCCGCTGCCTTTCTCTTCTCTTTCCCTGTATTCATCGCTCTGTGGTGATGATTCTGTTATCCAAATGGAGAGGAGGAGAAAGAGAGCTGGCTGTGGGGCCGCCATGTCTGCATGCCGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023782 lncRNA downstream 118796 20779031 ~ 20782016 (-) False XLOC_012053
TCONS_00024888 lncRNA downstream 226921 20670398 ~ 20673891 (-) True XLOC_012051
TCONS_00024886 lncRNA downstream 288928 20610476 ~ 20611884 (-) False XLOC_012049
TCONS_00024885 lncRNA downstream 289091 20610476 ~ 20611721 (-) False XLOC_012049
TCONS_00024892 lncRNA upstream 294750 21213422 ~ 21220479 (-) True XLOC_012063
TCONS_00024893 lncRNA upstream 514021 21432693 ~ 21442279 (-) True XLOC_012067
TCONS_00023812 lncRNA upstream 915062 21833734 ~ 21835452 (-) False XLOC_012072
TCONS_00023813 lncRNA upstream 920957 21839629 ~ 21842130 (-) True XLOC_012072
TCONS_00024539 lncRNA upstream 944983 21863655 ~ 21864182 (-) True XLOC_012073
TCONS_00023783 mRNA downstream 3405 20802421 ~ 20897407 (-) True XLOC_012053
TCONS_00023780 mRNA downstream 3562 20704534 ~ 20897250 (-) False XLOC_012053
TCONS_00023779 mRNA downstream 50933 20704534 ~ 20849879 (-) False XLOC_012053
TCONS_00023781 mRNA downstream 182967 20709282 ~ 20717845 (-) False XLOC_012053
TCONS_00023777 mRNA downstream 189077 20702015 ~ 20711735 (-) False XLOC_012053
TCONS_00023784 mRNA upstream 23386 20942058 ~ 20958153 (-) True XLOC_012056
TCONS_00023785 mRNA upstream 44805 20963477 ~ 20979077 (-) False XLOC_012057
TCONS_00023787 mRNA upstream 65126 20983798 ~ 21049260 (-) False XLOC_012058
TCONS_00023788 mRNA upstream 77357 20996029 ~ 21049260 (-) True XLOC_012058
TCONS_00023789 mRNA upstream 132350 21051022 ~ 21057674 (-) False XLOC_012059
TCONS_00023778 other downstream 197515 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023774 other downstream 234886 20659871 ~ 20665926 (-) True XLOC_012050
TCONS_00023754 other downstream 756896 20122026 ~ 20143916 (-) True XLOC_012040
TCONS_00023750 other downstream 999955 19900754 ~ 19900857 (-) True XLOC_012037
TCONS_00023731 other downstream 2549967 18350726 ~ 18350845 (-) True XLOC_012025
TCONS_00023786 other upstream 48163 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023793 other upstream 211589 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023801 other upstream 361201 21279873 ~ 21280185 (-) True XLOC_012064
TCONS_00023811 other upstream 915052 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023820 other upstream 1084185 22002857 ~ 22010668 (-) False XLOC_012077

Expression Profile

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