RNA id: TCONS_00025288


Basic Information

Item Value
RNA id TCONS_00025288
length 2454
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_012646
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 12058403 ~ 12118907 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCAGCCGGTGGAGGATGCGGGGAATCGGTGGATCAGTACCGGAGCGAGGTGGAAAGGCTGACCCGAGAGCTCGCTGAGGCAAACCGGGAGAAGATCCGGGCTGCGGAATGCGGTCTGGTGGTCCTGGAGGAAAACCAGAAGCTCAAACATCAGTACGCCGAGCTCGAGATCGAGCAGGAGGCTTTAAAACAGGAGCTAGAGCAGCTTCAGGAGGCATTTGGTCAGGCATACACCAACCAGCGTAAAGTAGCCGAGGATGGGGAGACAAATGAAGAGACGCTGCTGCAGGAGTCAGCCTCTAAAGAAGCCTATTACATGGGACGTCTGGATGACCTTCAATCCCAGCTCAAAGTGAGCAGCTCCGCAGCCTCCAACGCCCAAGCAGAGACCGAACACCTCAACGCCCTAATGCAGGAACTCAGAGAGAACAATGAGACGTTAGAGCTGCAGAGGAGCCGGATGAGAGAGGAGATCAGAGAGTATAAGTTCAGAGAGGCCAGACTTCTGCAGGACTACACTGAGCTGGAGGAGGAGAACATCACTTTACAGAAACTGGTGTCAACACTCAAACAGAATCAGGTGGAATATGAGGGTCTAAAGCATGAAATCAAAGTGCTTGAAGAAGAAACGGTGCTGCTCAACAGTCAATTAGAAGATGCTTTACGGTTAAAAGACATTTCCCAAGGCCAGTTGGAGGAAGCGTTGGATTCTCTGAAGAGCGAACGAGAGCAGAAGAACAATCTGAGAAAAGAGCTGGCTCATCATCTCAGCCTGACTGACACCAGCACTCACCTGGCCATCTCTGCCGTGGAGGGTCTGAAGTTTGCAGAGGAGGCTGCGACCAATGGCACTCCTAACAACGAGGACAGCAACCGGTGTAATAATGAGTGTAATGGACATGGACCAAAAGGAGAATACCATCGCAGGAAGACAGAGATGCTCCCGGTGTCTGATCTCTTCAGTGAACTCAACCTGTCTGAGATACAGAAACTCAAGCAGCAGCTCATACAGGTTGAGCGAGAGAAAGCAATTCTACTTACCAACCTGCAGGAGTCTCAAACTCAACTGCAGCACACGCAGGGTGCTTTAACTGAGCAGCACAGACGTGTTCACCGCCTTACGGAACGTGTTAATGCTATGAAACGCCTCCACAATGACAAGGAGTTTGACACAGAAGAGTCCGAGAAGGGCGACGGTCCTATTAACGGTTGCTGTGAGTTTGAAACAGACATCAATGGAATAGAGCTTCTAGAGTGCAAATACAGAGTTGCCGTGACTGAGGTCATTGACTTGAAGGCGGAGCTTAAGGTGTTGAAGGAAAAGTATAACCAGTCTTTGGAGAGCCAATCAGAAGAGAGCAACCACAGCGAAGGGAAGGTCCAGGCGCTTGAAGAACAGGTGAAACAACTGGAGAAAAGCTGTCGTGAGGCACGTGAGCGGGTCAGCAGTCTGGAAGCTGAGCTTCGGTGTGCTTCTGGAATGGCCAGCGAAAGTAACGGCATGCTGAATGCAGCTCAAGATGAGCTGGTTACATTTAGCGAGGAACTTGCTCAGCTCTACCACCACGTCTGCTTGTGCAACAATGAAACGCCAAATCGTGTCATGCTGGACTACTACCGTCAGAGTCGGGTCACACGTAGTGGCAGTCTCAAAGGCCCAGAAGACCCACGAGCCCTGCTTTCTCCACGTTTAGCTCGGCGTCTTGCAGCTGTGAACTCCTCAGACATGTCCAAGAACGGAATTAAAGGGGAAGGAGGAAGTCCCAATAGAACCCCATTTGGCTCACCAATCAATGGTTCATCTCTCTCATCCTCCACAATTCCAGAGACAGGTGATCTCCGCAGGGAGCCCATGAACATCTATAACCTCAACGCCATCATCCGTGACCAAATCAAGCACCTGCAGAAGGCTGTAGACCGCTCTCTCCAGTTGTCCAGGCAGAGGGCTGCTGCTAGAGAGTTGGCGCCTATCCTCGATAAGGACAAGGAGGCCTGCATGGAGGAGATCCTGAAACTCAAATCGCTCCTGAGCACCAAAAGAGAGCAGATCGCCACCTTACGTCTTGTCCTAAAAGCCAACAAACAGACTGCTGAGGTGGCCCTGGCAAACCTCAAGAGCAAGTATGAAAATGAGAAATGCATGGTGACGGAGACAATGATGAAGCTTAGGAATGAACTCAAGGCTCTCAAAGAAGACGCAGCCACCTTTTCCTCACTGAGGGCAATGTTTGCAACAAGATGTGATGAGTATGTAACTCAACTAGATGAGATGCAGAGGCAGCTGGCTGCCGCAGAAGATGAAAAGAAGACTCTGAACTCCCTCCTGCGAATGGCCATTCAGCAGAAACTGGCCCTCACGCAGCGCCTGGAGGACCTGGAGTTTGACCACGAGCAGTCGCACTGTGGCCGTGGAGGGAAAGTCGGTATTTTCCTTCTGGTCCCACTCAAATAG

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0072393 microtubule anchoring at microtubule organizing center biological_process
GO:0048260 positive regulation of receptor-mediated endocytosis biological_process
GO:0033365 protein localization to organelle biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0034452 dynactin binding molecular_function
GO:0045505 dynein intermediate chain binding molecular_function
GO:0070840 dynein complex binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-9 Predicted to enable several functions, including dynactin binding activity; dynein complex binding activity; and dynein intermediate chain binding activity. Involved in motor neuron axon guidance and regulation of retrograde axon cargo transport. Predicted to be active in Golgi apparatus and cytosol. Is expressed in Rohon-Beard neurons and secondary motor neurons. Orthologous to human BICD1 (BICD cargo adaptor 1).

Ensembl:

ensembl_id ENSDART00000193632

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026874 lncRNA upstream 24921 12032452 ~ 12033482 (+) True XLOC_012645
TCONS_00027063 lncRNA upstream 25011 12030408 ~ 12033392 (+) False XLOC_012645
TCONS_00027064 lncRNA upstream 25011 12030663 ~ 12033392 (+) False XLOC_012645
TCONS_00027062 lncRNA upstream 364135 11661577 ~ 11694268 (+) True XLOC_012641
TCONS_00026873 lncRNA upstream 789054 11264335 ~ 11269349 (+) True XLOC_012638
TCONS_00027065 lncRNA downstream 244268 12360479 ~ 12362826 (+) True XLOC_012648
TCONS_00027066 lncRNA downstream 335943 12452154 ~ 12462510 (+) True XLOC_012649
TCONS_00027067 lncRNA downstream 464238 12580449 ~ 12654645 (+) True XLOC_012650
TCONS_00026875 lncRNA downstream 825589 12941800 ~ 12942020 (+) True XLOC_012652
TCONS_00027068 lncRNA downstream 1017446 13133657 ~ 13159754 (+) True XLOC_012654
TCONS_00025286 mRNA upstream 85144 11970987 ~ 11973259 (+) True XLOC_012644
TCONS_00025285 mRNA upstream 148931 11858397 ~ 11909472 (+) True XLOC_012643
TCONS_00025283 mRNA upstream 508497 11506561 ~ 11549906 (+) True XLOC_012640
TCONS_00025280 mRNA upstream 1098974 10929661 ~ 10959429 (+) False XLOC_012637
TCONS_00025292 mRNA downstream 31760 12147971 ~ 12197085 (+) False XLOC_012647
TCONS_00025293 mRNA downstream 31760 12147971 ~ 12229524 (+) True XLOC_012647
TCONS_00025294 mRNA downstream 539555 12655766 ~ 12834323 (+) True XLOC_012651
TCONS_00025295 mRNA downstream 961589 13077800 ~ 13102767 (+) True XLOC_012653
TCONS_00025296 mRNA downstream 1046517 13162728 ~ 13179510 (+) False XLOC_012655
TCONS_00025284 other upstream 227383 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 601073 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025273 other upstream 1316240 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025271 other upstream 1387665 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025267 other upstream 2041777 10016508 ~ 10016626 (+) True XLOC_012628
TCONS_00025309 other downstream 1832599 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025324 other downstream 2526660 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025333 other downstream 2872868 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025343 other downstream 3596218 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 4017473 16133684 ~ 16140348 (+) False XLOC_012697

Expression Profile

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