RNA id: TCONS_00025412


Basic Information

Item Value
RNA id TCONS_00025412
length 6341
RNA type mRNA
GC content 0.43
exon number 43
gene id XLOC_012726
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17624295 ~ 17657802 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGCCCTCTCACTCAGTTAGAATGTACACAGACGACGAACTTCAGTTGGTAAACCTAATGTTTTGTAAGCGTCTTGCACACTTTGTAAGTGACTGATTGTGCTGCTCATTAACCAAATAATACAACGTCGAATTTACAGTATGTACAGCATAAACGCTAAACTTATTTAATTCCCATACGAATTGActataagttaacttaataagaGAATGACGCATTCGATAAAAAATGCTCTGGGTCGTCATGTGCTGGCCTGAAAAAGTATTAGAAGAGATGCGGATGCCATGTTTCGTCGTCGATAGATAAAAATGATGTTGTAGGGTACATTAAAGCACGTATTGGacgcaccaaaaaaaaaaaagttagctgaTCTGTCTCGCGCCAAAATCCTGGCATAATGAGATCCGTTTTTCTTATGCATGTGAATGGAATCGAAACCAAACCTGAGCGggttgctttcattttctcctttCAATTGGACAGATGCGTTATGCCACCAGCGCTAATGGATGAGGATGGAGAGGATGGACTGGTCGGGGGACGCCCTGACACTGGTAGCCCAAGAGGCCAGTGTACTGGTGGACTTGCTCTGCGAACAGGATAGTAGTGTTTTGGACCATATCTTTGACTTGTTGGAATCTAACACACAGGATGAGATACGATCACTGATCAACAATAGAGATCGTGTCTCAGCCATCGTGGATTACTTCAAGACTTCAGACAATATCACATGTAGAAAGTTTTTCTGCACcatatatgagtactgtaaagACATCCCTTTCTATCTTGAAACTACACTAGTGTCAATAGCTGGAGATCCAATTGATAATTATTCATCATCAAGAAATGTGAAACGTCTACGACTAGATCCTTTACAGAGCTACACAGATGCTCTGAAGTCCATGGTAAAGGAAAAACATAAGACAGTGATGCAGAGTGTGGTAAAGGATATACGTCTAGATGACACATGGGTGTATTTAAAGCACAGGAACCCTCCACGAGCAAAAGACAGGACCCTCCAGCTTCAAGCCTCTCTAGACAGCCATGAAGGTGAAGAGTCAGAGCACAAAGTGTCCGTTGAGTCTCTTTTGAAAACCACTGGCAGGGTTGTTGTGCTGCTGGGCCAGGCTGGATCTGGTAAAACCCTGCTCGTGCACTGCCTCGGCCATAGCTGGGCTGAAAACACCTTCCCGTCTATTCAGCTGCTGTTTCTGCTGGAGTTCCGGCAGCTCAATCTGATCTCTCGAGACCTGTCCTTGAAAGAATTACTTTTTCTCTTCTATCCTGCTTGTTCGTATgttgaagaagaaaaagaagaagtgtTTGCATTCATCCTCACACACCCGGACAAAGTCTGCTTCATATTAGATGGTTACGATGAGTTTAGAGCCAAACTCACAGATCCTAGAGAACTTGAGAGCACAGTTGATCTGAGCACACCCATGCCAATGGCCGATCTACTTTCAGGACTCTGCAGTCGTAAAATTCTTCCAGATTGCACTGTTTTGGTCACCTGCAGACCAAGAGATGTGACGGACATGTTTGGAAGCCCTGGGCTCATAACCTGTGAGCTTCAGGGGTTTGACCGATTGGGGGTGAAGGAATACGCTGAGCAGTACTTCCATGAAAAAGGAGATCTCAAAACAAATGCTGTTAACTTGTTGATGGATAACCGTCACCTCTTGTCCATGTCTCATGTGCCTGGACTCTGTCATATCTGCTGTATATGTGTGGATCATCTGTTCTCCAGTGGTGAAGTGTTGAATCATCAGCTTCCAACGTCCTTAACCCAAATCTACATCCAGATTCTGTTGGCATTCCTCAGTCGGTTCAATGAAGATGGAGTGTCTAAAACATCTCTGCTTATGAGATACAGGACTAAAATTGTTGAGATGAGCCAACTGGCTCTCAAAGGACTGGAAGGAAGCACCATAGTCTTTATGGAAACAGAAGTATCCAAGGAACTCCAAGattttggtgtcagaagtgggataCTGTCTCGCGTAAAGCTGACGCATGAGGATGGATCTTCAGGATACGGTTTTACCTTTATGCACCTTACAATGCAAGAGTTTCTCGCTGCTCTCCACCTCATGACTAGTCAGACAATCACAGATGGTCAACTTAAGAAGAAGCTTAACTTGAAAACCAGATGGACTACCAAGACTGACCCAAAATCCGTCTTTACAGACTCTGTCCATCTTTATGTATGTGGGCTTGCAGCAGAGGCCTGTACTTCCTGTTTGGTGCAACTTAAAGGAGCAGAGAGTGAGACGACTTGGGTAAAAAAGCGACAAGCTGCTGTTCGTAATGTTTTACTAGGTTTAGCGGGAGGTGCCAGTCATACAGGTCCAAAAATTGTGGAGCTGTGCCGATGTGCTCATGAGACACAGGATGCGAAACTGGCAAAGGCTATTGGTTCGAGACCACAGATTGAACTGCGAAATATCAGACTGAATGCTGTTGACATGGATTCCCTTGCATTTGTAACAGCGGCTGCTGATCAGACTGTATGTCTAGACTTTGGTGGATGTTCAATTGACTTGGATTGTTTGGAAATCCTCCCTAGTTTCAAGAATGTGGATCACCTCATttTCCGTAGCCGGAAATATGATGACAAATTTGCAGAGACTTTGTGCGGTATCCTGTCTAAACTCCAGGCCTTGCAACAATTAGATTTTATCAGTGGAGGCCTCACCGATGTTGGAGCGGCTAAACTTGCCAAGGCGTTGGAGGATTGTCCAAACATCACACACCTGAATGTCAGTGATAACTCTTTGAAAGATGAGGGTATAAGAGAGATTGCAGAAACAGTGTCCAGGCTGCACAACATCTCCTCTATTTTAATGGGGAAGAATAACATTTCCACAGATGGGATCCTCACTCTCATTGAGAGAATGGCCGCTTGCACCTCTGTTCAGGAAGTCCATGTTGAGGGGAATAAAGAGATCAACCTTAGCTTCTCAAAACGCTCTGACACAATCAGtgAAAGCAAAGACTTGAAAAACACAGAAGAGACAAAGAATATAATCTTGAAGCAGTGTAACCTCACAGTTTCCCATGTGGCCAGCTTGTGTAATAAACTCAGAGGCTTTGCCATCCTAACGCTTTTAGATTTGTCCAACAACTCTCTGGGTAACAAAGGCCTGAAGAAAATTTTGGACCTTCTGCCTAAACTAGGAGGAATTCAGGAGATAAATGTCAGTGAAAATGGTGTTGATATGGAGGGTGTGGTGATGCTGGCTTCTGCCCTCTGTAAACAGTACAACTTAAAAAGAGTGGATGCAAGtgaaaatggaaagaaaaaagtgGTTCTTGGGTTTGACACCACCAGAGGGCATAATTCAGGGGAGCTGACTCAAAATGAAACCGGGATGCAACTGCACAAAAAACTGAGtttaacCCATAGTGATATCCAACCTGCCTACATGACCAAGCTGTGTAAGCAACTGGTGAAATGCAAAAACCTACTGGACATTGACTTCTCCAATCTAAAATTAACCGACGATTCTGTTGAGAATTTGATGTTGATCCTTCCTGTCATGTTGTCTCTTCATGTACTGAACTTAAGTCATGTTGATCTGTCTACAAATGGGGCTTTGATATTGGTCAGATCTCTTGCCGATTGTCAGCGTGTCACTTCTGTCGAACTcagGCACCAAGCTGAAGCATTCATCAAATTTGTTCCTGAGAAAGCTGAAGTAGCAATTTGCAAGCTCACAGAGTATAATCTGAGCAAAACCAACGTCGTGAAGCTCTCGAAGATACTGGAGAGCTGTCCTCATCTGTCTGAACTGGACTTGTCTCATAACGTTCTCAGAGATGAAGGTGTGAAGTGTTTTGTTGACCATTTGCCCAAACTAAAGATCTCCAGCTCAGTGAGCCTCATTGGCAACCGAATGACTCAAATCGGGGCACTGCATCTGGTCAACTCAATGAATACCTGTGAAAAAGTTGTTGCTGTCGAAGTCAGTCTTGGAGTGGAGGATCAGTCTCTGATTCAGTTTGTGCAAGAACATGCCAATGGCAAGACTCTTAGGCTAAGGGAGTGCAGTTTTGAGCTTGCACACTTGAAGATGCTTGTGAAAATCCTGACAAAATGCCCAAGACTCCTTTCATTAGAATTGTCTTCTAATTCACTGAACAGTCAAGGACTTTTTTCCTTACTGGATAGCCTGGCTGAACTATCCACAATCCAAACTTTAACGTTGAGAAATAATGGCCTGAATTCTGAGCAAATTGAGCATTTTGTTAAACAGTTTAGTCACTGCAACCAACACAGAGACATCAGAATCGAAGAGTCGTGGATGACAGGAAGTGCTGCTATTGGCCTCATTGCGAGATGCCTCAGTCTACAGCAGCACATCAGAGAAATCAGGGTCCACCGTGCATCTATAAACATGATCATTGAAGCCAATTCCATTTCCAGCTCCACTTCAGTcggtCATTCTGAAAATGTGTTGCCTGCTCTGCAGTCTATCAGCTTTGATGACTGTGATGTAGAAGGACAGCACCTCACTCAACTCGCACTTCCCATCCAGAAATGTCATGCCTTACTGGATTTAAAGTTCTCGCCACTTAAATTGGACAGAATAGGTGCAGAGTTTTTTTCTGCAGTCATTCCATTCTTAAGGAATCTCAGGAACATCACTCTGGATCTGAAAGGAGCCGCTGAGGAGGAAGTGGAAACTCTTGCTGAGGCCCTGCCAAACACTCCAGCCTTTGAGAGTCTGAGCTTGTCCCAGCTTGTCTTAAGTGACCGTGGAGCTACACTATTCGGAAAAGCTTTTCAAAATGTGCCAAATCTGAAGTCATTCAGTATGTTGCAGTGCTCTGGTTGGACAGCAGCTCGAGGCTGTGACTTGGTCAGAGGCTTGATGCAGTGTGTTTTGCTGACAGAAATACGACTGGAGTCTGTGGTACTCGACCAGGAGGGTATAAATATCCTAGCTCAAGGCTTGAGTCGACTGGCCTCACTTCGGAGGCTCAGCTTAAACAACATTACAGTGGTGACATCTGAGACTTTTGTAAATGGCACTGGAATACTCTGTCTACTGGCCTCTTTTAAAGGTTTCAAACAGATGGAGGAGATTGAGTTGGAAAGTTGGCGGATGGGAGATGGTGGTACCAATGAGCTTGTGAAATACATACCTTCATGGACAGGGCTGGTAAAAATAAGtctgtCAGAAAACATTGTGACTGACCAGGCCGGAGAGAAACTCCTCACAGCACTTTCCCATTGCAGAGCTCTTCAGCAGCTCAAGTTGTCTAAAAACAAGCTTGGTCAGGCCAGTGCTGCCAAGCTTGCTAAAATTCTTCCATTGCTACCTCAGCTTTCAGAACTCAATTTATCAGAGAATCAGTTTGGCCCACAAGGATCAAGTGTTCTTTGTGAAGGTTTGGTGAGCATGAAGGCACTGAAAAAACTACATTTGACTTCGGTTGAGTCTTCAGATCTGGTTGGTGTGGCTTCATCCTTAAAACACTGTCCATCCATAGAGGATGTCAGTTTGTCATGGAATGGATGTGGTGACAGTCTTGCACGGACACTGGCTGAGATTCTTCCCTTGTGTACGAAGCTGAAAAGACTCGAACTCTGGAGGAACTCAATTGCCAAAGATGATGAAAATCTGAAAGATCCCAAACTCAACTTTTCATCGGTTTAatccctttctttcttttttctattttggatttagtttttttgtgttttacttttttatattataaatactaCTAGTTCTGTGCTCTTTGCATTTTTAGTTCAGTGCTATTTGCACTATTTATACAGGGAACACATTACCTCATTTGAGCAATTCATTACACCAAACGATACAGTTTCCAGCAGTTCAGGGATGGAAAATCTTTTAATGTCCATGTAATAGAAACAATATTCTCTAGTCAGTAAAAAGAAAGAGCATGTGAAATAGCTCAAGAGCATTTTAAGAGCATAAAAATATTTCTAAGCCAGATGGCACATTGAGGCAGGCAGCTCTCTTGACACACACATGCTCTTTCTTTTCTGATCCACTGACATCTATTATAGGCATTTATGCACTGATCCACCTTGGACATCACACTGTTGTGTTCCCTTTTGAATTACGTATTTATATCTGCATTTGACTTGATCTGCTCAGCTTTCATCTACAGAACTAATTTTGTTATTTGCGATATGCTTCATTCTGTTGTAACTGTAAGTGAAACTGCACAGTGCTTGAATTACTGATACACAAAACCACTTTCTTTGTCACAGTAGTTGCACTGATCAGTTTGCATTTATTATGCCTATTCATGCCTTTTTTGTGTACTTTAATAAAGGTGATTAATCACTTCTTTTGG

Function

GO:

id name namespace
GO:0060339 negative regulation of type I interferon-mediated signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0045345 positive regulation of MHC class I biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04054 Pattern recognition receptors

ZFIN:

id description
ZDB-GENE-080429-2 Predicted to be involved in intracellular signal transduction; negative regulation of type I interferon-mediated signaling pathway; and positive regulation of macromolecule biosynthetic process. Predicted to be active in nucleus. Orthologous to human NLRC5 (NLR family CARD domain containing 5).

Ensembl:

ensembl_id ENSDART00000033762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025404 lncRNA upstream 38545 17583483 ~ 17585751 (+) True XLOC_012724
TCONS_00027083 lncRNA upstream 141072 17473975 ~ 17483224 (+) True XLOC_012719
TCONS_00027084 lncRNA upstream 147413 17476375 ~ 17476883 (+) True XLOC_012720
TCONS_00027082 lncRNA upstream 444219 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00027081 lncRNA upstream 636082 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00027085 lncRNA downstream 455241 18113043 ~ 18165017 (+) False XLOC_012734
TCONS_00027087 lncRNA downstream 455241 18113043 ~ 18226851 (+) False XLOC_012734
TCONS_00027086 lncRNA downstream 455241 18113043 ~ 18226851 (+) False XLOC_012734
TCONS_00027088 lncRNA downstream 455241 18113043 ~ 18249698 (+) False XLOC_012734
TCONS_00025437 lncRNA downstream 455241 18113043 ~ 18249698 (+) False XLOC_012734
TCONS_00025410 mRNA upstream 2470 17611627 ~ 17621826 (+) True XLOC_012725
TCONS_00025405 mRNA upstream 12447 17600570 ~ 17611849 (+) False XLOC_012725
TCONS_00025407 mRNA upstream 15718 17600729 ~ 17608578 (+) False XLOC_012725
TCONS_00025406 mRNA upstream 18508 17600639 ~ 17605788 (+) False XLOC_012725
TCONS_00025403 mRNA upstream 25541 17583479 ~ 17598755 (+) False XLOC_012724
TCONS_00025417 mRNA downstream 2356 17660158 ~ 17704546 (+) False XLOC_012727
TCONS_00025418 mRNA downstream 2600 17660402 ~ 17672543 (+) False XLOC_012727
TCONS_00025419 mRNA downstream 6096 17663898 ~ 17703462 (+) True XLOC_012727
TCONS_00025421 mRNA downstream 67608 17725410 ~ 17751843 (+) True XLOC_012729
TCONS_00025422 mRNA downstream 96708 17754510 ~ 17760150 (+) False XLOC_012730
TCONS_00025408 other upstream 15725 17600761 ~ 17608571 (+) False XLOC_012725
TCONS_00025409 other upstream 18501 17600946 ~ 17605795 (+) False XLOC_012725
TCONS_00025401 other upstream 44051 17580159 ~ 17580245 (+) True XLOC_012723
TCONS_00025397 other upstream 57784 17537311 ~ 17566512 (+) False XLOC_012723
TCONS_00025387 other upstream 550275 17072075 ~ 17074021 (+) True XLOC_012714
TCONS_00025420 other downstream 17538 17675340 ~ 17675455 (+) True XLOC_012728
TCONS_00025433 other downstream 306124 17963926 ~ 17994368 (+) True XLOC_012731
TCONS_00025438 other downstream 593697 18251499 ~ 18251615 (+) True XLOC_012735
TCONS_00025443 other downstream 1017900 18675702 ~ 18676884 (+) True XLOC_012739
TCONS_00025444 other downstream 1051247 18709049 ~ 18710155 (+) True XLOC_012740

Expression Profile

//