RNA id: TCONS_00000218


Basic Information

Item Value
RNA id TCONS_00000218
length 1394
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_000119
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9860381 ~ 9866856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTACATATAAATTTGAATTGGTCGCATTGTCATTCACTACAATAACAACGTGGCCCATACATAGGGAAAACAGGTTATCCTTCTTATTTATGAAGTTGTTTGTCTGCTGTTGGCAGATGTTGTACACGTGGAGGTCGCTCACTCTGACGTACAGCTCTGGCGCTTCAATACACTTCCGACAACACGGAAGATGTGACGTTGCACtgctgaatgaatgaactgactGCCACTGAGTCTTCATAAAACTTCATACAGAGGAGATATTGATTTCTAAAGTTTCCAAATATCACAATGTCTGGTTCTACCGTGGATTCGACAAcgctgtgtctgtttgacgtggaCGGGACTTTAACAGCAGCTCGTCAAAAAGCCACCGCAGACATGCATGAGTTTCTGTCTAAACTGAAACAGCGTGTGAAAGTCGGAGTGGTTGGAGGATCAGATCTGGACAAAATCAAAGAGCAGCTTGGAGATGATGTGATTGACAGAGTGGATTACGTGTTTGCTGAGAACGGTTTGGTTGCGTACAGGTTTGGAAAGCTTCACTCTGTGCAGAATATTCAGGCCTACCTGGGAGAAGACATTTTGCAGGAATTCATCAATTTCTGCCTCAATTACCTTTCAAAGATTAAACTGCCTAAAAAAAGAGGCACATTTATTGAATTTCGGAATGGAATGCTGAATGTCTCTCCGATCGGTCGAAGCTGCAGCCAACAGGAAAGAATCGAATTCTTTGAACTTGATAAGaAGGAGAAGATTAGAGAAACATTTGTCTCCGTTTTAAAAGAAGAGTTTGCTGGGAAGGGACTAGCTTTCTCCATTGGTGGACAGATCAGTTTTGATGTGTTTCCAGAAGGCTGGGATAAGCGCTACTGTTTGGGAATTGTGGAGAAAGACTCCTATCAGCACATCCATTTCTTTGGAGACAAAACAATGCCTGGAGGAAATGACTACGAAATCTTTGTAGACCCCAGAACAATCGGCCATGAGGTCAAATCTCCTGAAGACACACAGAGGATCTGCAGGGAGCTCTTTTTCAGCTGAGAAAAGACCCTGAACACAACCTCTGCTATCTAGAATGAAGTATACAGAAGACTACACTGTCTATGAATCGTGAAACTATGAATGAAAGTCTCACTATTGACTTTATTGTCTTGTATATGCACATGCTTGTACCTCATGACAGGTGCTTATGATAAATCTGGGTTACTGTGTAcagtatgcatttatttttataggtAATGTTATGCATTACATACAGCTTTAAGGATCATTGTGGGTGCTAGGGTCATTATGTCTGAACTCCTGTGCCTTAAATCACATCAGTACTGGACATTCTAAAATCTTCTATtgatattaaacacattataatcCAAATAAAAGGGAAGATCT

Function

GO:

id name namespace
GO:0009298 GDP-mannose biosynthetic process biological_process
GO:0006487 protein N-linked glycosylation biological_process
GO:0090171 chondrocyte morphogenesis biological_process
GO:0022008 neurogenesis biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0006013 mannose metabolic process biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004615 phosphomannomutase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030722-6 Predicted to enable phosphomannomutase activity. Acts upstream of or within neurogenesis; protein N-linked glycosylation; and skeletal system development. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; hatching gland; periderm; and polster. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation and congenital disorder of glycosylation Ia. Orthologous to human PMM2 (phosphomannomutase 2).

Ensembl:

ensembl_id ENSDART00000054848

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000214 lncRNA upstream 575030 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 698906 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 704860 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00003032 lncRNA upstream 727891 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003031 lncRNA upstream 883959 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00000220 lncRNA downstream 20099 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00002811 lncRNA downstream 79808 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000233 lncRNA downstream 187552 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 595188 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 750668 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00000216 mRNA upstream 148079 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA upstream 149136 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000215 mRNA upstream 566266 9290103 ~ 9294115 (+) True XLOC_000117
TCONS_00000211 mRNA upstream 633177 9199031 ~ 9227204 (+) False XLOC_000114
TCONS_00000212 mRNA upstream 653765 9199149 ~ 9206616 (+) True XLOC_000114
TCONS_00000219 mRNA downstream 20135 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000221 mRNA downstream 87633 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000222 mRNA downstream 87677 9954533 ~ 9966195 (+) True XLOC_000122
TCONS_00000223 mRNA downstream 99528 9966384 ~ 9982114 (+) True XLOC_000123
TCONS_00000224 mRNA downstream 127955 9994811 ~ 10000361 (+) False XLOC_000124
TCONS_00000213 other upstream 638765 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 704860 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 705108 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2796438 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3072577 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 184918 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 184928 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 187163 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 215622 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 451221 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01225430_01228695.mRNA True 992 mRNA 0.41 8 CI01000300 1225430 ~ 1228987 (+)