RNA id: TCONS_00000219


Basic Information

Item Value
RNA id TCONS_00000219
length 1449
RNA type mRNA
GC content 0.48
exon number 17
gene id XLOC_000120
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9886955 ~ 9914630 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTCTTCAACTTTACATCCACAGCAGCAGAAAACATGACCATCAACACACTCAGCCAGGATGGCGTGCAGAGACAGCAAATGCCCTGTTTGACCAAGATGGAGCGCATGATCATTTCTATGCAGGACCCCGATATGGGCATCAAGCTGCGCAACCAGCGTCTGCTTATTACAGTCATCCCACATGCAATGACCGGTGCAGACATTGTTGAATGGCTGATTAAGAAGTTAACTATTTCTGATGAAGAAGCAGCGCACATTGGACAGTTTCTCGTGAAGTATGGCTACATTTACCCTTTAAAAGAACCCAGAAACCTTATTCTGAAAGCTGACGAATCAGCATATCGTTTTCAGACACCGTATTACTGGATGTCTACACGCTGGCCTGCTTCAGAACTAGACTATGCAATCTACCTGGCCAAGAAGAATATCAGAAAACAAGGAGAATTAATCGAGTATGAAAAGGAGTGCTATAATGCTTTACATAAACGTATCAACCACACCTGGGACTTTGTTGTGATGCAGGCAAGAGAGCAGCTCAGGGCATCAAAACAGCGTCGGAAGGCAGATCGTATAGTGCTGGAGTGTCAGGAACAAGCGTTCTGGCTAGTGAACAGACCTCCTCCGGGGACACTGGATATTATGAATTATGGGCCCGAGAGAAGAACAATGAACACACGCGTGCAGCTGAATGCAGAATTCTACAAAAAAGAGATTGAACACAACAGGATGAGCCTGGCGAGGAATCGTGTCAAGTCCTCAATCTGCCTTGAGAGctATGTGAAGTACTGTGAGCAGTACCAGCCTCATGACCCCATAATGCAAGGGTGTCTTCCCAGCAATCCCTGGATTACAGATGATGTGCTGTTTTGGAACATGAACTCTGAAGCGGTTACTGTTCCCACTAAACTGCGTGTGGAGCGCTGGAGCTTCAGCTTCACGGAGCTGCTGGACGACCCGATGGGCAGAAAAGAGTTCCTCATTTATCTGGAGAAAGAGTTCAGCGCGGAGAACTTGTGCTTTTGGCAGGCCTGTGAGGACGTTCGTCATGGAGAGAGCTCCAAAATTCCCGAGAAAGTGGACGAGGTTTACAAGCAGTTTCTGGCTCCTGGTGCAAGTCGCTGGGTGAATATCGACAGCAAGACCATGGAAAAAACCTTGGAAGGGCTCAAGCGTCCTCATCGTTTTGTTTTGGATGATGCTCAAATGCATATTTACTTCCTCATGAAAAAGGATTCGTTCCCTCGCTATTTGAAATCTGATCTCTACAAGAGCTTATTGGCCAGAGCCATTGTGCCACAGGAGACCAAGAAAAGtgtGTTCCCGTTCATGCGTCGGCAGCGCCACTCCAGCCCCTCGCCTGCTCTCGTCACCCATACCACAGAGGATGATGGGAAGGCAAAAAACTCAAACTCTGTCAAAAGCAATTCTGGAACCGCGTCCAGGCTG

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0048880 sensory system development biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0043679 axon terminus cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-080220-46 Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Orthologous to human RGS11 (regulator of G protein signaling 11).

Ensembl:

ensembl_id ENSDART00000135702

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000214 lncRNA upstream 601640 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 725516 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 731470 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00003032 lncRNA upstream 754501 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003031 lncRNA upstream 910569 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00002811 lncRNA downstream 32425 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000233 lncRNA downstream 140169 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 547805 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 703285 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 731025 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00000218 mRNA upstream 20135 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000216 mRNA upstream 174689 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA upstream 175746 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000215 mRNA upstream 592876 9290103 ~ 9294115 (+) True XLOC_000117
TCONS_00000211 mRNA upstream 659787 9199031 ~ 9227204 (+) False XLOC_000114
TCONS_00000221 mRNA downstream 40250 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000222 mRNA downstream 40294 9954533 ~ 9966195 (+) True XLOC_000122
TCONS_00000223 mRNA downstream 52145 9966384 ~ 9982114 (+) True XLOC_000123
TCONS_00000224 mRNA downstream 80572 9994811 ~ 10000361 (+) False XLOC_000124
TCONS_00000225 mRNA downstream 80574 9994813 ~ 10000376 (+) True XLOC_000124
TCONS_00000213 other upstream 665375 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 731470 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 731718 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2823048 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3099187 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 137535 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 137545 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 139780 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 168239 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 403838 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_01241607_01253459.mRNA True 1455 mRNA 0.40 9 CI01000300 1241607 ~ 1254009 (+)