RNA id: TCONS_00000223


Basic Information

Item Value
RNA id TCONS_00000223
length 679
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_000123
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9966384 ~ 9982114 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGATTGGGAGAATCAACACACAGATTCAGAATCAGATGGCTTGCTCTGATGAATCTGGCTCCAAATCCCCACCACCTTCATACAGTAACATGGATGAGATTCCTCTTTATGACGAGATAATCCCTCCACCGCCAACCATCAAAACTCCTGCCACACCACCGCCTGCCTACAATGAGCCCAacATTCCTCAAGGGATTCCATTAAACACATGTACAGGGGGACCAAACCCTTATCCCATCCTAAACCAGCCCACTCAAATAGCAGCGGTGACACAACAACAACAAGTGTTTGTGCAGCAGTCGGTGAATCCTGTAGCCCCGCAGGTGATCGTGGTTCAGCCACAACAAAGCACTACTTTAGATGACACACCAGCATCCATTGTGTGCAGGTATTGCCATCAGAGCATCGTCACTCATGTGGAGTATAAACCTGGTGTAATTTCATGGCTCATGTGCGTCGTAATAAGTTTCCTTGGGGGCATTTGCGGATGTTGTGTCATCCCATTTTTTGTCAGAGGATTTCTGGACGCCCATCACTCCTGTCCTTTATGCAAAAGGCACATAGGAATTTACACTCGCAAATGACTCTCCAAACTCTTGCAGacacaaatacaaaatataaaacatcataCTTGCATTAACCAAAATCATTATAGATATCTAATTAACTTTCAAGCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-395 Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000132607

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002811 lncRNA upstream 14511 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 51754 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 681033 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 804909 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 810863 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00000233 lncRNA downstream 72294 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 479930 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 635410 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 663150 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 663250 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000222 mRNA upstream 189 9954533 ~ 9966195 (+) True XLOC_000122
TCONS_00000221 mRNA upstream 1619 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000219 mRNA upstream 52145 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000218 mRNA upstream 99528 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000216 mRNA upstream 254082 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000224 mRNA downstream 12697 9994811 ~ 10000361 (+) False XLOC_000124
TCONS_00000225 mRNA downstream 12699 9994813 ~ 10000376 (+) True XLOC_000124
TCONS_00000226 mRNA downstream 21079 10003193 ~ 10032308 (+) False XLOC_000125
TCONS_00000227 mRNA downstream 36352 10018466 ~ 10033113 (+) False XLOC_000125
TCONS_00000228 mRNA downstream 37539 10019653 ~ 10032308 (+) True XLOC_000125
TCONS_00000213 other upstream 744768 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 810863 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 811111 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2902441 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3178580 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 69660 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 69670 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 71905 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 100364 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 335963 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

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