RNA id: TCONS_00000224


Basic Information

Item Value
RNA id TCONS_00000224
length 680
RNA type mRNA
GC content 0.41
exon number 6
gene id XLOC_000124
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9994811 ~ 10000376 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACCAAACACTATTGAGGAGCTGAATCTACCAGGACCTTGTCAAGATGTGGATTTCTGCAGCATTCCTTCTTTTTGCATTGGCTGTAAATGGAGTCAAGTCTGATGTTCCAAACATTAGTCGAAGATGCCCCTCTGGCTGGGAGAAATTTGGATCACAATGCTTTAAGTTTTTCAGCGAATATAAAACATGGGCTGAGGCTGAGAAACATTGTGTTGACCTCGGAGGAAACCTAGCATCCATCCAGAGTGATATCACTCACAATTTTCTTATAGCTTATTTGAAAAGACAAGAAAAAGGCATCACCCGGACCTGGATTGGTGCTCATGATGCAACTCagGCGGACATCTGGTTTTGGAGTGACGGATCAAAGTTTGAATACAGTGCCTGGCATTCAGGAGAACCAAATAATGGAGGAAATGCCGAAAGATGCGCGGAGATGGGCTTTGGAGATGAGCAGCGCTGGAATGACGCACGTTGTGAAACTCGTCTCAATTTCATCTGTTACAGAATGACAAGAATCAATATGTAATAATCATTTTAACTGATAAGGTAAAATCATGACAGTCCATCTCAGACCAAGTCCTCAAAATAGCCGATTGTAACAGATGCTTTGCCATTAAATGGTAAATTCAGTCTTAATGCAATCATCATGCAACAATAAAACTCTTATCAAATCC

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-394 Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDART00000143719

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002811 lncRNA upstream 42938 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000220 lncRNA upstream 80181 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000214 lncRNA upstream 709460 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000210 lncRNA upstream 833336 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 839290 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00000233 lncRNA downstream 54047 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 461683 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00002812 lncRNA downstream 617163 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00003035 lncRNA downstream 644903 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00003036 lncRNA downstream 645003 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00000223 mRNA upstream 12697 9966384 ~ 9982114 (+) True XLOC_000123
TCONS_00000222 mRNA upstream 28616 9954533 ~ 9966195 (+) True XLOC_000122
TCONS_00000221 mRNA upstream 30046 9954489 ~ 9964765 (+) False XLOC_000122
TCONS_00000219 mRNA upstream 80572 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000218 mRNA upstream 127955 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000226 mRNA downstream 2832 10003193 ~ 10032308 (+) False XLOC_000125
TCONS_00000227 mRNA downstream 18105 10018466 ~ 10033113 (+) False XLOC_000125
TCONS_00000228 mRNA downstream 19292 10019653 ~ 10032308 (+) True XLOC_000125
TCONS_00000229 mRNA downstream 51402 10051763 ~ 10059496 (+) False XLOC_000126
TCONS_00000234 mRNA downstream 73982 10074343 ~ 10114016 (+) False XLOC_000127
TCONS_00000213 other upstream 773195 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000209 other upstream 839290 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 839538 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2930868 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 3207007 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000230 other downstream 51413 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 51423 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 53658 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 82117 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 317716 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

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