Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028953 |
| length | 950 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_014651 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 15142527 ~ 15229421 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0061386 | closure of optic fissure | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0007266 | Rho protein signal transduction | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:2001045 | negative regulation of integrin-mediated signaling pathway | biological_process |
| GO:0043085 | positive regulation of catalytic activity | biological_process |
| GO:0001843 | neural tube closure | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0042995 | cell projection | cellular_component |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0008157 | protein phosphatase 1 binding | molecular_function |
| GO:0004864 | protein phosphatase inhibitor activity | molecular_function |
| GO:0019888 | protein phosphatase regulator activity | molecular_function |
| GO:0003779 | actin binding | molecular_function |
| GO:0072542 | protein phosphatase activator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-051030-69 | Predicted to enable actin binding activity; protein phosphatase 1 binding activity; and protein phosphatase activator activity. Predicted to be involved in several processes, including enteric nervous system development; morphogenesis of embryonic epithelium; and negative regulation of integrin-mediated signaling pathway. Predicted to act upstream of or within nervous system development. Predicted to be located in lamellipodium. Orthologous to human PHACTR4 (phosphatase and actin regulator 4). |
| ensembl_id | ENSDART00000048151 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00028947 | lncRNA | downstream | 984490 | 14188120 ~ 14190086 (-) | True | XLOC_014648 |
| TCONS_00030177 | lncRNA | downstream | 1108026 | 14062042 ~ 14066550 (-) | True | XLOC_014646 |
| TCONS_00028942 | lncRNA | downstream | 1241390 | 13928251 ~ 13933186 (-) | True | XLOC_014643 |
| TCONS_00028940 | lncRNA | downstream | 1251472 | 13919007 ~ 13923104 (-) | True | XLOC_014642 |
| TCONS_00029759 | lncRNA | downstream | 1717929 | 13454968 ~ 13456647 (-) | True | XLOC_014639 |
| TCONS_00030179 | lncRNA | upstream | 834255 | 16026893 ~ 16030742 (-) | False | XLOC_014657 |
| TCONS_00030178 | lncRNA | upstream | 834255 | 16026893 ~ 16030742 (-) | False | XLOC_014657 |
| TCONS_00030180 | lncRNA | upstream | 834255 | 16026893 ~ 16030745 (-) | False | XLOC_014657 |
| TCONS_00030182 | lncRNA | upstream | 834255 | 16026893 ~ 16030750 (-) | False | XLOC_014657 |
| TCONS_00030181 | lncRNA | upstream | 834255 | 16026893 ~ 16030750 (-) | False | XLOC_014657 |
| TCONS_00028948 | mRNA | downstream | 203763 | 14903379 ~ 14970813 (-) | True | XLOC_014649 |
| TCONS_00028949 | mRNA | downstream | 206384 | 14903616 ~ 14968192 (-) | True | XLOC_014650 |
| TCONS_00028946 | mRNA | downstream | 982984 | 14187540 ~ 14191592 (-) | False | XLOC_014648 |
| TCONS_00028945 | mRNA | downstream | 1018795 | 14153486 ~ 14155781 (-) | True | XLOC_014647 |
| TCONS_00028944 | mRNA | downstream | 1212107 | 13961396 ~ 13962469 (-) | True | XLOC_014645 |
| TCONS_00028955 | mRNA | upstream | 84075 | 15276713 ~ 15281996 (-) | True | XLOC_014652 |
| TCONS_00028956 | mRNA | upstream | 114330 | 15306968 ~ 15397946 (-) | False | XLOC_014653 |
| TCONS_00028957 | mRNA | upstream | 115264 | 15307902 ~ 15335787 (-) | True | XLOC_014653 |
| TCONS_00028958 | mRNA | upstream | 215725 | 15408363 ~ 15420718 (-) | False | XLOC_014654 |
| TCONS_00028959 | mRNA | upstream | 224734 | 15417372 ~ 15420678 (-) | True | XLOC_014654 |
| TCONS_00028935 | other | downstream | 1400107 | 13733168 ~ 13774469 (-) | True | XLOC_014640 |
| TCONS_00028926 | other | downstream | 2541313 | 12633149 ~ 12633263 (-) | True | XLOC_014634 |
| TCONS_00028921 | other | downstream | 2781818 | 12386297 ~ 12392758 (-) | True | XLOC_014630 |
| TCONS_00028910 | other | downstream | 3028811 | 12134847 ~ 12145765 (-) | True | XLOC_014624 |
| TCONS_00028962 | other | upstream | 834781 | 16027419 ~ 16027490 (-) | True | XLOC_014658 |
| TCONS_00028963 | other | upstream | 835818 | 16028456 ~ 16028590 (-) | True | XLOC_014659 |
| TCONS_00028964 | other | upstream | 836670 | 16029308 ~ 16029443 (-) | True | XLOC_014660 |
| TCONS_00028972 | other | upstream | 1806989 | 16999627 ~ 16999742 (-) | True | XLOC_014664 |
| TCONS_00028976 | other | upstream | 2015607 | 17208245 ~ 17210735 (-) | True | XLOC_014667 |
