RNA id: TCONS_00036393


Basic Information

Item Value
RNA id TCONS_00036393
length 635
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_017420
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30975034 ~ 30982570 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaggtctaagtttaacctaagtgccgtgttgctgatgaacatctttatatgcaaaaccggagcacccagagaaaacccaccaaacgcagagagaatttgcaaactacacacagaaatgcctgctAATCCAGCTGCGGCTCGAGTCAGcatccttgctgtaaggcgacagcactacctattgtgccaccacgtcacgctcttattaaattatatttatataattttgtgtttcagtacatgctattttgggaagacaaaatatattcataagctctcagaaaattcaataagagaattcattcattcattttaagaaaattaactgcacaattacttgaaatgtgtgggattacattatttgttaacccaaagtgagtttctctttctttgcagtattggatgcctgattgcagttcaactccaaactcagttggaccagctgatcagtgtcttcagtattaccacaagctactgggcagatgtgtggacagctatgagccaaacttgggacgtttggtttttaggtaataccagtgacaaagtattcagtaaattgcttataataaaagatgctcactgcttacccccttatagttaagttgtttgcagtttcattgttgtaaaaataccatact

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034626 lncRNA upstream 69550 30902538 ~ 30906716 (+) True XLOC_017418
TCONS_00034618 lncRNA upstream 392999 30578967 ~ 30583267 (+) False XLOC_017414
TCONS_00036612 lncRNA upstream 544828 30387024 ~ 30431438 (+) True XLOC_017412
TCONS_00036610 lncRNA upstream 798051 30167134 ~ 30178215 (+) False XLOC_017410
TCONS_00036397 lncRNA downstream 9 30977505 ~ 30982570 (+) True XLOC_017420
TCONS_00034648 lncRNA downstream 1254113 32231609 ~ 32240969 (+) True XLOC_017430
TCONS_00034649 lncRNA downstream 1293411 32270907 ~ 32402360 (+) True XLOC_017431
TCONS_00034660 lncRNA downstream 1524267 32501763 ~ 32506237 (+) False XLOC_017436
TCONS_00034661 lncRNA downstream 1540713 32518209 ~ 32520467 (+) True XLOC_017436
TCONS_00034630 mRNA upstream 28719 30939178 ~ 30947547 (+) True XLOC_017419
TCONS_00034625 mRNA upstream 86446 30797329 ~ 30889820 (+) True XLOC_017417
TCONS_00034624 mRNA upstream 86544 30725778 ~ 30889722 (+) False XLOC_017417
TCONS_00034623 mRNA upstream 254404 30702531 ~ 30721862 (+) True XLOC_017416
TCONS_00034622 mRNA upstream 361747 30610547 ~ 30614519 (+) True XLOC_017415
TCONS_00034631 mRNA downstream 98992 31076488 ~ 31212556 (+) False XLOC_017421
TCONS_00034632 mRNA downstream 99042 31076538 ~ 31208474 (+) False XLOC_017421
TCONS_00034633 mRNA downstream 208385 31185881 ~ 31189424 (+) False XLOC_017421
TCONS_00034634 mRNA downstream 228850 31206346 ~ 31208449 (+) True XLOC_017421
TCONS_00034635 mRNA downstream 239999 31217495 ~ 31231122 (+) False XLOC_017422
TCONS_00034628 other upstream 28721 30938162 ~ 30947545 (+) False XLOC_017419
TCONS_00034629 other upstream 28877 30939167 ~ 30947389 (+) False XLOC_017419
TCONS_00034627 other upstream 33172 30937934 ~ 30943094 (+) False XLOC_017419
TCONS_00034620 other upstream 396575 30579013 ~ 30579691 (+) False XLOC_017414
TCONS_00034614 other upstream 590947 30381098 ~ 30385319 (+) True XLOC_017411
TCONS_00034636 other downstream 240043 31217539 ~ 31223027 (+) True XLOC_017422
TCONS_00034640 other downstream 409559 31387055 ~ 31387171 (+) True XLOC_017425
TCONS_00034641 other downstream 744756 31722252 ~ 31723497 (+) True XLOC_017426
TCONS_00034652 other downstream 1431391 32408887 ~ 32432467 (+) True XLOC_017432
TCONS_00034653 other downstream 1489390 32466886 ~ 32470454 (+) True XLOC_017433

Expression Profile

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