RNA id: TCONS_00035263


Basic Information

Item Value
RNA id TCONS_00035263
length 9086
RNA type mRNA
GC content 0.44
exon number 28
gene id XLOC_017855
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3346242 ~ 3403033 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aAAATATAGTATCCAATCAAGAATCAGATTATAAAAATGTGACTGCTTACATGTGCTTCTTCCAACATTTTGCACTTCTGTTACTACTAGCTTCTGAAGAAGAACAGATGGGGGGTGGCACTAGTCCATTGAGGAATGCCTGCGCGTCCACATTTAATGAAACTGGGCTTAGGGATACTTTGTGTACTCGCTGGGAGGAGAACAACATACCAAGTTCTCTGATATTAGAAGAGGTGGAACGGGTGAGCGTGTGTGAGCTGGAAGTTGATGCTGTTGCTGCTGATGTTCTCAACCGTCTCGAGATTGAGAATCAGATTGGCAGAAACCCTGGACTCCAAGCCATCTGGGACGATGAGAAACAGCGGAGACGGCAGAGAAGCGAAAGCTCTCATATTGATGTAACTGAATCGCAAGATAGAGACCTTGCGGAGGTTGCGGAGAGTGAAAAAATCTTCATGAAGAGAGTTAAAGACATTCTCAGGGAAAATGAATTTGACATgaCTCAGGCAGGGTCTGAAATGGATTCTTTTCCAGATCTTTCACTCTATTCTACTGTACTAAGCCCAGATCGCTTGCCTTCCATACATGCTAGCCAAGTAGATCTTCATCAAGATGCAGTCAAAGATACAAAAAGGGACAGTAGAAAAGATGACGAAGTAGCAGTTGTTGATGAAGAGGCCATTTTGAGCATGTTGGAAAATAGTCAGTCTTTCCTCCAGCTCTCTCAGACATCCAGCCAATCAGCAATATTTGACGGCAGTCAAGAACAGGCCATGGTTGATCTTCTTGAAGCATTGGCTAATGATGGATTTGGAGATAAGAGCTCCAAAGCAGTGACCCAACAGCTAACCGGGATTGCTAGTTGCGTCTATAACAGTGATGATGAGGAAGCTGGACCTGAACTGGAGAAAAAAGAATCCGAGCTTAGTAAAATAATGTCACAAAGATGGGACAGTGACATTCCAGAGCCCTCTGCCAGACAAAGATTATTTATGAAAGCAAACGAAAGCTCCAGTGAAGAGCAACAAGCTTCATCTGATGAAGAAGGAAATTGGAAGGGAATTAACAGTTTTCAAACTGATCTGTCCATTCCCCAGCTGGATGGAGCAGCAGATGAGAGTAGTGATTCATCGTTAAAAGAAAAAGGATCCCAGAGACGTTCATATATAACAGGAACAGACAAGATCCTCGCCAGCAGAAAAGTTTTCGCAAATGAAGCCGTTCGTATCGAGGCATCATCCTCTGTTAATATTGTGAATGAGTACAAATGTTCTGAGCAAAGACCCGATCGAGAAGATTTGGCAGATAAGCATTCAAAATGCGGAGAGTCGATTGAATCTTCAAATATTTCAAGTCTTAAAGAGGTGACACCAGTTAAACACCCCATCTCTTCTAATTCAAGAATTACATATAAAGTTGATTCTGATCATCCAGATCTTGAGGATTTAATGTTTGGAAATTCTAAGCTTGCCCAAAGCATAAAAAAATATTCCAGCATTAAGCATGTCGAGAAAAACACTTTACTCATCCTGGAGGATCAGAGAAGCTCCTCTGCATGTTATTCTGGGCTGACAGACAGCGCCACCAAGACTAAAATAGTACTCAATCCAAGTGACTGCAGAAGTCCTGTAAAAGTTTTTGACCAGACACAGACATTAGAAGATAGCCCTGCTTTAGGACCTGAAGAAAGTGAGATGGGACAAGGAACGAAAGAGGATGATGTTGGTGAATTGAAAATACGATATGAAGACTACCAAGAGAATAAAGCTGATAGGACCATTGTGGCGCAGCAGGAGGCACACTACAAATTTTTCCCTAGCGTTATTCTGTCTAATTGCCTGGCAAGACCAATCAAAAAACAGGCCGGGAGCAAAATTGGAGAGGTTTCCTGTACCTTAGACCAACCTGAGCAGCGAAAGTCAAGGTTAAAGTTGACCAAGAAAAAACCTACATTAGATCAAAAACGGGAACTTCCTGTAAAGACACATTCTCCTACGAAAGAAGAACCTCCAGCCCTTCTTTCCATCACTCCAGGCTCTCACAATCAGAACGAAGTGAGCAAGGAGGTTGACATGGAAACTTCAGGATCGTTAATTGAGAGTTCGGGAAAGGGCGATTTTGCAGATATTCCAACAAACATCTCTTGTACCAAGGTGGCAAGTTTGCCAGGCAGCAAATATACCTTGCGGACCAAAAGAAAAAGGATTTATGAAAAAGGAGATCATCCAAGATCTGGTTCCTCCAAACAAGCCTCAGTACATCATGATGACCCTAAAGGAAGTGATCATGTCTTCAGTCAAAAAAAGAGGAAAGTGACTAAAAAAGAGCCACCGGTTATCATCAAATACATAATCATTAACAGATTTAAAGGTCAGAAGAACATGTTAGTAAAGATTTCTAAAGTCAGTTCTGATGAAACTCACACAGTTTTAACACCGGAAAAGCTTGCTGGATATGAACAGCTTGCTCCTCTCAAAAAATTCTGGCCCAAAATTCCAGAGTCTACAGCAGAGAAGTACCCGTCGCTTGAGCCAAAAGTAAAGAAATGTCCCAAACGGAAAGCGAAGATCAACCCAGTGGTAAAAAGGATGACCACCTTCCCAAAATCCAAGTGTCCACGAGTTGGCCAGACTAGAGGGGAAAGGCGTGCTAAAGCAATGTTGCCTGTGCAAACATTAGCCCCTCCATGGCCTTCCTATAATGATTTTACAGATGACACTTGTACAGAGTATTGCGATGTCATGATGAAGTTGGGTTACTTGTCAGAAAGAGCCCCCAGTCCTACTGACTCAACCCCACCTAGATGTTGGTCTCCTACAGAGCACTTGCATGGATCAAATTCAAATGATCATTTTATAAATCCTCATAATGATCCATGTCTAGGTTCTTCTTGTGAAGCCCTGACTCCAAAACCATCCCAAAGTGGTCTTTTGAATAGAAGCAGAATGCAGAGACCTAAGAAGACTTCTGGGAccagccaaaaaagaaaatcgaATAGcttaacaacagcaacaaacaagGGTTCTCTGAAAACTGAGGATTCTAAATGGAAAAGTATTCCAGCAGCTTCAAGGAAGCATAAGAAATATTGTGATGGAATTGAAAGGCCAATGTTTGTAGATGTCACATCTACTTCTCAGAAAGGATGGATGCGCAATGAGAAGCAATTACTTCAAAGAAAGCAGGATCATGGCAAGGGAAGCAATAATTCACAGGGCCTGAATTCATCTGACAATTTACCTGTTACTCAATTATCTGATTATCTAACTCCTTTCCAATGTCCCAGTTTTCTAAAAAGCAACCCGGAGGACCTTGCTCTCGGTTGTTCAGACTCTAAAACTGAGGTTCATAGTTTCTTTGATTCTATTGCTTCAAATAACTCTCAGAAAGACTTACGAATTGCTCCCAATTCCACTATTGAAAAGTCTTTTAGTATTCTTTCCCAACCCACAAAGACTGTAGGACATCCATGTTCTGTCATTACATATGGAAGTTCTAATTCAAAATCCAAAAATACAAGTCAGGATGGGACTAAAACAAAAAACCATGATGTCATATCAGTGGTCTCTGGCCATGAAGAAAGATCTGGTACTGTACAGCAATCACAGTTACCCATAACATCGAGAAGGCCGCAAGCGAGAAAGAAAGACACTGGGACAGCTTTATTGAAGCCTGTTGATTCTATATCTTCTCCTACTTCCTCTACTAAGAGTGCAGCTATATATGAATCAAACACAGATCTCACATTGTCCTCCGATTTTAAGAATAGGGAAATGTGTGTTTTGAAGGAACTTCTCCAGAAGAGGCAGCTTAAGGAAGAACAGGAAGCAAATAAAAGTGATGGTTTGACTGAGGCGGTTTCTTCCACCAGTCAAAATACTGATGTTGCCAAAAGGGCAAAATCTAAGAGAACTCTGTCATCACCATCAAGAAAACCAAGGGGTGCAAGAACAAAAGTGCAAACCAGatgtaagaaaaataaacaagatgACCAGAGAAATGATTGTCTTTCCTCAGATGGCAGTCCTGTGTTTTTTTCTGATCCTGGCTTTGACAGCTGTTGCTCTGTTGAGGATAGCTTGTCCCCAGAACTTCCAGATAATTACAGATTTGATATCAATGTCATCGGCCAAACAGAGTTCTCCAGTCTTTATTCTGGTAACCAGTTTGTGTTAACTGACAAGATCTTGCCTCAGAAGTTCCTCAGTGATGTCAGTCAAGAGGCAGCGAATGCGCTGGTTGGGTTGGGGAACAGGACACAAAAGATGTTTGATGTTGATGATGACTTCAATCATGGAAACGATCGGAATAAATCTGGTGCTCTTAGTCCAGAATTGTTTGATAAGGTGTCTTGTGAAAATGGCAGAGTTTTTCCCAATAAGGTATCCCTGTCTCTGCTGGATTCAGAAAAGATCTTTAGCACTAATTGGGCTGGTTCTTTAGGTAAAATTCATGGCCTCAGCCACTTTCGGGACTTTCACTGTGAGAAGAGAGATGTGCTGCTTGACCCAGAGCCCAAATCCCCCATTATGTCAGCTTCTTTTGCTTACGGTGTTTCCCCAAATAGTGATCTCCTAGATGGCAGTTCACTAACACCGAGCAGTTCACCACGGTCAATCAACTCTCTGTCTCAGCTGAAGACTTCAAGGACTGGTGGAACTCGCATTCTCAAACCTTTGATGTCTCCACCTGCTCGAGAAGAAATCTTAGCTAATTTGATGGATCTGGACTTTTCAGAAGCTACAAAACAGGAACCATTCTACAGTGACCCGTCAGATGTGCCATTGAAGCCAAGGGAGGTTGGTGGACGAAAGTTGATTTTGGAAACCAGGCAGGCAAGCAGACTAGTTGAATTCCATGGGGACTTATCTCAAAATGGTTTGCAGTTTTGGAAAGTCGCATTTTCTGCAATGACAAATCAGGCCTCTGCTCCAACTCAAGGATGTAAATCCTCCAAACTGATCAAGAACCAAAGCCCATCTTCTGTCAGTGACCCAAAAGTTATCATCCTTCCCTGCAAGTGTGCCCCTAGCCGAGAGCAGGTGCAGCTTTGGGCGCAGGCCAAAAAACAGTATGAGTGCCTTCAGAGAGGTAGGATACAAATGGGTGGCCATGAGATTTCAGAGCTGAAGCAGAGTACATGTGACAGGAGCACAACTCAGAAGACCTCGAATTCGCTTTTCTCAGAGAATCATGATAAAAGGCCTGAAAAAAATTCAGAATCGCAACATAACAGTCGGAATGACTTCTGTTCACCCATCCATTTTTCACCAGTTAAAGCAGCTTCATCTGACAGTAGCCCTAGCAGTGTGAAATGTGTCCAGGACATTGACAAAACAAAAGATTGCCGGATTACTTCTCCTCCAAACTCACCTGAGATTTCTACATGGCAAGATAGCCCAGACGAGGTTGAGCAAGATGAGGATAAGGAGAATCTGACTGGGGGGTTGCAACCCCTCTCCATGGATCAAAATTTGAATGAGACGTTACTTGAAAATGCGGAGTCAAAAGATCACTTGAGTCCGTCATTTTTTGGAATTAAAGGCCTAGTTTCAGATGTCAGATGCTCGCACCTACTCCATAGTACACCTGTTCAAAGGAGAAACAGCACTGACGATGAAGCCTCTAGCTGCAGTCCAGTGCGACATGAAGACACTGAGTGCAGATCTCAGCGGCTTCATCAGAggagtaacaaaaacaaaaatgctttacGGAGAGTTTTGCTTAGCACACAAGTGAAGAATCAGCTCATCAACATGAATGttccaaagaaagaaaactcaCAGATTGAGGGACCGTCATTCTGTAATTCATATGGCTTTAAAGTCAGTATGCAGAACTTGCAGGAGGCCAAAGCATTGCATGAGGTACAGCACCTCACACTGATGAGTATGGAACTCCATGCAAGAACACGTCGCAACCTTGAGCCTGACCCTGAGTTTGACCCAATTTGTGCCTTATTCTACTGTCTGAGTTCTGATGTGCTTCTCCACGATTCTGGCACTACTCGGATAGAGGGTGCTATTGTTATTGATAAAGAGAGTTGTACTTCAGCTCAAGCTTCCAGAAGTTCGACACCTTTTCTTTTTAGGTGCGGTGTGACAGGACTGCCGGTGACCTACACCTGTGATGAGAAGGAGCTGTTTGAAGAGGTCTCTAACATAATTAGGAAGTATGACCCAGACATTCTTGTTGGCTATGAGGTCCAGATGCATTCTTGGGGCTATTTACTACAGCGTGCTTCAACGCTTGGTGTGAACTTGTGCCAACAACTATCCCGTGTGCCAGGAGATTCACAACAGAACCATTTCATCCCAGAGAAAGATGAATATGGAGCAGAAACTATGACGGAAATCCATATTACTGGGCGCATTATCCTCAACATCTGGAGAATAATGAAGACTGAGGCTGCTTTGAATAACTACACTTTTGAGAATGTGGCTTTCCACCTCCTACATCAGCGCTATCCTCTGTACAGTCATCGCACACTTTCTGATTGGTTTGACACACATCTGCACAGGTGGAAAGTGATGGATCATTACGTGAGTCGTGTGTGTGGCACAGTTCAGTTACTCCAGCAGCAGGATATTATTGGCAGGACTAGTGAGCTGGCACGCGTGTTTGGAATCCAGTTCTACCATGTGCTAACCAGGGGCTCACAGTATCGTGTGGAATCAATGATGTTAAGGGTTGCAAAACCAATGAATTACATCCCAGTGACCCCAAGTACTCAACAACGTGCCCAGCAAAGAGCTGCACAGTGCATTCCACTTGTCATGGAGCCAGAGTCGCGTTTCTATAGCAACTCAGTCATTGTGTTAGATTTCCAGTCGCTTTATCCATCCATCGTCATTGCCTACAATTACTGTTACTCCACATGCCTAGGCCACATTGAGAATCTTGGAACATATGATGAGTTCAAGTTTGGTTGTGCATCTCTCAGAGTCCCTCCTGACCTTCTGTATCAGCTCAGAAATGACATCACTGTTTCTCCCAATGGTGTCGCATTTGTTAAGTCCTCAGTGCGCAGGGGTGTCCTTCCCAGAATGCTGGAGGAGATTTTGAAGACAAGGATTATGGTGAAGCAGTCCATGAAGGCGTACAGGAATGACAAAGCTCTTTCACGGCTGCTAGATGCCAGGCAGCTTGGCCTCAAGCTTATTGCTAATGTCACTTTTGGTTATACTTCTGCCAACTTCTCAGGACGTATGCCCTGTGTTGAGGTGGGTGACAGCATCGTACACAAGGCTCGAGAGACACTGGAGAGAGCCATAAAGATGGTCAACGACACAAAGAAGTGGGGGGCACGTGTTGTCTATGGAGATACAGACAGtaTGTTTGTGTTGTTGAAAGGAGCAACCAAGGAACAGGCATTTAAGATTGGTAATGAAATTGCAGAGGCGGTCACTGCTACCAACCCCAAACCCATCAAGCTGAAGTTTGAAAAGGTTTACCTTCCATGCATATTACAGACTAAGAAGCGCTATGTTGGGTACATGTATGAAAGTGTGGATCAGGAAAACCCAGTCTTTGACGCTAAAGGCATTGAAACTGTACGCCGTGATGGCTGCCCTGGTGTTTCCAAGaTTTTGGAGCGATCACTGAAGCTACTTTTTGAGTCGCGTGACATTAGCCAGGTGAAGCAGTATGTGCAGCGCCAGTGCGTGAAGGTGGTAGAGGGCAAAGCCAGCATGCAGGATCTCACCTTTGCCAAGGAGTACAGAGGCAGCGGATCATACAGACCAGGGGCTTGTGTCCCTGCCCTGGAACTCACAAGGCGTATGATGGCGTTTGATCGACGCTTAGAGCCACGTGTTGGTGAACGTGTGCCGTATGTTATTGTGTACGGGTCTCCAGGAGTACCACTTATACAGCTGGTTCGTCGTCCTTTAGAGGTCCTACAGGACCCCAGTCTTCGCCTCAATGCCACCTATTACATCACCAAGCAGATCTTGCCACCACTCGCACGAATTTTCAACCTGATTGGAGTCGATGTGTTCAGCTGGTACCACGAGTTGCCGAGGGTGCAAAGGGCTTGGAGCTTTACCAGCAGTGGAAGGGGAGAAGAAGGCACAAAAAAGGGCACCATCTCTCAGTACTTCACAACACTGCATTGTCCGGTTTGTGATGAGCTGACGCAACTGGGAGTGTGTGCACGTTGCCGGGCTGAACCACAGTGTGTTGCTGTCCACCTACACCAAGACTTGCGGCTTTGGGAAAGTCAGCAAGACCAGCTTTTGAAGATCTGTCGAAGCTGCAGTGGCAGTGCAGAGCGCCAAGTGCCATGCGTCTCATTGGACTGCCCTATACTCTACAAACTGTCTCGTGTTAATAGGAATTTATCCCGGGGCCCATACCTTCGGCAGCTGGTTGAACAGTTCTTGTAGTTCAGCCATCTATCCCCCACACCCTGGCATTTTGTTGTGGTGCTTAACATTGTGTGCCGTTCATCTGAGGACGCCGAACTGATCCTGATGCACTGTTTACATTTCCTGTGTAGCTGTATTTTGAGTGTTTGACATTTCTGCTAATTGGCAAGTCGAAGGACATCATCATCTGCGCTGCAGCATTTTCAACATCAAGGGTATTCAATTCTAGCTGCGATTCTTTAGCAGCAGTGTTTGACTCTAGTGATGCTTCCTCTGTATTAGAGAAGTCTTGTAAATAGGCCTTGCATATAATGATCTAAACGTGAGGGGGGGAAACAAGGGTTGTTTGATTTTCCTGGCTCCGCTTCGGGATTTCACAGATTTTCGGAGAAAGAAGTGTCTTGTTTGTCCATCTTGCATATGGGGGAAAGTCCGAGCACAAGCAAATCAGTGTAAGCCTCGGACTTTTAAAGTACGCTTGATAATTTATTGCAAGAGTAAATATTATCTGTGTTGacaattgtgattttaaaaaccCCTTTCCGATGCCTTCTCTGTTCTGATCCAGACACCTGTATAAAAACTCTGGATTGTTTTATATAGAGCTGCATAATCagtgtttgtaaatgtaaaaaaaaaaataccaaggtgCTTTGTTTTTAAAGAACATTGTGATGTAAAGTTGTATCAAATAAAACTCATTGCATATAACAGATA

Function

GO:

id name namespace
GO:0042276 error-prone translesion synthesis biological_process
GO:0019985 translesion synthesis biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0016035 zeta DNA polymerase complex cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko01524 Platinum drug resistance
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-050302-55 Predicted to enable DNA-directed DNA polymerase activity. Predicted to be involved in double-strand break repair via homologous recombination and error-prone translesion synthesis. Predicted to act upstream of or within translesion synthesis. Predicted to be part of zeta DNA polymerase complex. Predicted to be active in nucleus. Orthologous to human REV3L (REV3 like, DNA directed polymerase zeta catalytic subunit).

Ensembl:

ensembl_id ENSDART00000136987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036444 lncRNA downstream 14571 3331457 ~ 3331671 (-) True XLOC_017851
TCONS_00036443 lncRNA downstream 19617 3326411 ~ 3326625 (-) True XLOC_017846
TCONS_00035243 lncRNA downstream 291836 3050634 ~ 3054406 (-) True XLOC_017835
TCONS_00035242 lncRNA downstream 325606 3017517 ~ 3020636 (-) False XLOC_017835
TCONS_00036442 lncRNA downstream 367158 2975705 ~ 2979084 (-) True XLOC_017833
TCONS_00036788 lncRNA upstream 31172 3421578 ~ 3424654 (-) True XLOC_017856
TCONS_00036789 lncRNA upstream 330919 3721325 ~ 3726728 (-) False XLOC_017857
TCONS_00036445 lncRNA upstream 331901 3722307 ~ 3726926 (-) True XLOC_017857
TCONS_00035266 lncRNA upstream 523018 3913424 ~ 3915770 (-) True XLOC_017859
TCONS_00035267 lncRNA upstream 552261 3942667 ~ 3953631 (-) True XLOC_017860
TCONS_00035251 mRNA downstream 26506 3316263 ~ 3319736 (-) True XLOC_017841
TCONS_00035250 mRNA downstream 26600 3312859 ~ 3319642 (-) False XLOC_017841
TCONS_00035249 mRNA downstream 36225 3290231 ~ 3310017 (-) True XLOC_017840
TCONS_00035248 mRNA downstream 55451 3290188 ~ 3290791 (-) False XLOC_017840
TCONS_00035247 mRNA downstream 69903 3238879 ~ 3276339 (-) True XLOC_017839
TCONS_00035265 mRNA upstream 437831 3828237 ~ 3911546 (-) True XLOC_017858
TCONS_00035268 mRNA upstream 564173 3954579 ~ 3997531 (-) True XLOC_017861
TCONS_00035269 mRNA upstream 636002 4026408 ~ 4031475 (-) True XLOC_017862
TCONS_00035270 mRNA upstream 642787 4033193 ~ 4049862 (-) True XLOC_017863
TCONS_00035272 mRNA upstream 759117 4149523 ~ 4157138 (-) True XLOC_017866
TCONS_00035262 other downstream 11484 3334542 ~ 3334758 (-) True XLOC_017854
TCONS_00035261 other downstream 12451 3333576 ~ 3333791 (-) True XLOC_017853
TCONS_00035260 other downstream 13416 3332611 ~ 3332826 (-) True XLOC_017852
TCONS_00035259 other downstream 15551 3330476 ~ 3330691 (-) True XLOC_017850
TCONS_00035258 other downstream 16515 3329513 ~ 3329727 (-) True XLOC_017849
TCONS_00035271 other upstream 735734 4126140 ~ 4126254 (-) True XLOC_017864
TCONS_00035279 other upstream 1344208 4734614 ~ 4737809 (-) True XLOC_017870
TCONS_00035282 other upstream 1363173 4753579 ~ 4766486 (-) False XLOC_017871
TCONS_00035291 other upstream 1515672 4906078 ~ 4907477 (-) True XLOC_017875
TCONS_00035297 other upstream 1930809 5321215 ~ 5321329 (-) True XLOC_017882

Expression Profile

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