Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00040004 |
| length | 1436 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 12 |
| gene id | XLOC_020056 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 2959879 ~ 3026838 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030154 | cell differentiation | biological_process |
| GO:0042149 | cellular response to glucose starvation | biological_process |
| GO:1990138 | neuron projection extension | biological_process |
| GO:0070301 | cellular response to hydrogen peroxide | biological_process |
| GO:0006417 | regulation of translation | biological_process |
| GO:0072755 | cellular response to benomyl | biological_process |
| GO:0031333 | negative regulation of protein-containing complex assembly | biological_process |
| GO:0097201 | negative regulation of transcription from RNA polymerase II promoter in response to stress | biological_process |
| GO:0031953 | negative regulation of protein autophosphorylation | biological_process |
| GO:1990253 | cellular response to leucine starvation | biological_process |
| GO:0071468 | cellular response to acidic pH | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0045666 | positive regulation of neuron differentiation | biological_process |
| GO:0060548 | negative regulation of cell death | biological_process |
| GO:0001933 | negative regulation of protein phosphorylation | biological_process |
| GO:0071494 | cellular response to UV-C | biological_process |
| GO:0071264 | positive regulation of translational initiation in response to starvation | biological_process |
| GO:0005844 | polysome | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:1905538 | polysome binding | molecular_function |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0004860 | protein kinase inhibitor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040927-10 | Predicted to be involved in several processes, including GCN2-mediated signaling; cellular response to starvation; and negative regulation of nitrogen compound metabolic process. Predicted to act upstream of or within cell differentiation; nervous system development; and regulation of translation. Predicted to be located in cytoplasm. Predicted to be part of polysome. Orthologous to human IMPACT (impact RWD domain protein). |
| ensembl_id | ENSDART00000063545 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042019 | lncRNA | upstream | 32263 | 2922151 ~ 2927616 (+) | True | XLOC_020054 |
| TCONS_00042018 | lncRNA | upstream | 132023 | 2814463 ~ 2827856 (+) | True | XLOC_020050 |
| TCONS_00042017 | lncRNA | upstream | 166318 | 2792575 ~ 2793561 (+) | False | XLOC_020048 |
| TCONS_00041858 | lncRNA | upstream | 338278 | 2602677 ~ 2621601 (+) | True | XLOC_020037 |
| TCONS_00042016 | lncRNA | upstream | 413001 | 2546086 ~ 2546878 (+) | True | XLOC_020033 |
| TCONS_00041859 | lncRNA | downstream | 83198 | 3110036 ~ 3110513 (+) | True | XLOC_020058 |
| TCONS_00041860 | lncRNA | downstream | 192165 | 3219003 ~ 3222417 (+) | True | XLOC_020061 |
| TCONS_00042020 | lncRNA | downstream | 302214 | 3329052 ~ 3335881 (+) | False | XLOC_020067 |
| TCONS_00042021 | lncRNA | downstream | 306665 | 3333503 ~ 3335881 (+) | True | XLOC_020067 |
| TCONS_00042022 | lncRNA | downstream | 1037763 | 4064601 ~ 4099599 (+) | False | XLOC_020072 |
| TCONS_00040001 | mRNA | upstream | 16925 | 2937485 ~ 2942954 (+) | False | XLOC_020055 |
| TCONS_00040002 | mRNA | upstream | 16925 | 2937501 ~ 2942954 (+) | False | XLOC_020055 |
| TCONS_00040003 | mRNA | upstream | 18036 | 2937551 ~ 2941843 (+) | True | XLOC_020055 |
| TCONS_00039998 | mRNA | upstream | 89769 | 2845763 ~ 2870110 (+) | True | XLOC_020042 |
| TCONS_00040009 | mRNA | downstream | 18657 | 3045495 ~ 3078347 (+) | True | XLOC_020057 |
| TCONS_00040010 | mRNA | downstream | 127038 | 3153876 ~ 3159456 (+) | False | XLOC_020059 |
| TCONS_00040011 | mRNA | downstream | 129548 | 3156386 ~ 3159183 (+) | True | XLOC_020059 |
| TCONS_00040012 | mRNA | downstream | 157662 | 3184500 ~ 3214544 (+) | False | XLOC_020060 |
| TCONS_00040013 | mRNA | downstream | 157723 | 3184561 ~ 3211990 (+) | True | XLOC_020060 |
| TCONS_00039978 | other | upstream | 328141 | 2631618 ~ 2631738 (+) | True | XLOC_020038 |
| TCONS_00039952 | other | upstream | 570628 | 2385384 ~ 2389251 (+) | True | XLOC_020009 |
| TCONS_00039951 | other | upstream | 573912 | 2384327 ~ 2385967 (+) | False | XLOC_020009 |
| TCONS_00039942 | other | upstream | 623850 | 2328299 ~ 2336029 (+) | False | XLOC_020009 |
| TCONS_00039935 | other | upstream | 685145 | 2269395 ~ 2274734 (+) | False | XLOC_020000 |
| TCONS_00040015 | other | downstream | 204774 | 3231612 ~ 3232634 (+) | True | XLOC_020062 |
| TCONS_00040020 | other | downstream | 348424 | 3375262 ~ 3376270 (+) | True | XLOC_020068 |
| TCONS_00040021 | other | downstream | 357894 | 3384732 ~ 3388004 (+) | True | XLOC_020069 |
| TCONS_00040022 | other | downstream | 733919 | 3760757 ~ 3760871 (+) | True | XLOC_020070 |
| TCONS_00040031 | other | downstream | 1651029 | 4677867 ~ 4677981 (+) | True | XLOC_020077 |
