RNA id: TCONS_00043273


Basic Information

Item Value
RNA id TCONS_00043273
length 1192
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_021823
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33752275 ~ 33757742 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATATATTCTAGCAGAAGTTTGTATGATTGAACTCAAGTTTGTGACACTGCTGCTTCAGGACCTTCCGGAAATGATCATGGGAAGCACGTTGGCGAAGTGTGCAGCCACAGACCTGGCCATTCAGTGGGTCGGGTGGGCACTTGCCTGCTCTTTCAAAACGGAGAAGTTTTACGACTTGGCAGGATCTGGTACCTTCATATTGCTGGCTCACCTCAGTCGTGTATGGGGCGGAAGTGGACACCTTAGACAGAATGTACAAACTGGACTTGTCACTGCATGGGGATTGAGGCTCGGGACATTTCTCTTTCTTAGAATCCTAAAGGAAGGACAAGACCGGAGGTTTAACAATGTCAGAGACAGCCCTGGGACATTCTTTGTTTACTGGACCATGCAAGCATTGTGGGTCTTTGTTACCCTTTTGCCCACCCTAATTCTGAACAGTGAGAGAAGAGATGAGCCTCTAGGCCCGCGGGACTACATTGGCTGGGGAATATGGGGGCTGGGTTTTGCTACAGAGGCCATTGCAGACCAACAGAAGTGGAATTTTAAAAATGATCCAGATAATGTGGGGAAGTTCATTCATCATGGGCTGTGGGCGTACAGCAGGCACCCAAATTACCTGGGGGAGATCCTGCAGTGGTCCGGCCTGTTCCTGTCTGCTTCCTCCATCATGCAAGGACCTCAATACCTCAGTGCACTTTCTCCACTTTTCGTTTGGTTCTTACTGAGACACGTTAGTGGGATCCCCATTCTTGAGAAGCAGGCTATGAAGAAGTGGGGGTCGGACCCCGCTTTCCAGAACTACGTCAAAAACACTCCCCTTCTATGGCCCTTTCCAAAAGTTAAAGGAGAATAAAGCATGTTTACAGTAATTGCACCTGACAAATGAACATTGAGAGCTGCTGATTGAATTCCTATATGGAAAATTTGTATTAGGTGCCGTTTACACTAGAGAGTTTTCATTTTAACGTTTGTTTTGATAGTTTTGTCTGTTGTCCACACTACACTGGCATATTTGACCTACAAAAACTGAGCGTTTTGCAAATGCTAAAGACCCTGTACTAGTTTGGGTTGGGTTGATTTTGATAAATTCAATAAAAGATGGattgaaacacattttttttgaaaatagaaGCACAGCCATCAGACAACCACTTTCTTTTTGCTCTACCAGACAATAGATCCTTTT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3630 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in membrane.

Ensembl:

ensembl_id ENSDART00000007260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044857 lncRNA upstream 293010 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00044856 lncRNA upstream 1172841 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 1189461 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 1264549 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00043257 lncRNA upstream 1342348 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043283 lncRNA downstream 220969 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 229713 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 281652 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 289674 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00044858 lncRNA downstream 289674 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043272 mRNA upstream 22723 33718602 ~ 33729552 (+) True XLOC_021822
TCONS_00043269 mRNA upstream 308220 33383583 ~ 33444055 (+) False XLOC_021819
TCONS_00043270 mRNA upstream 308220 33413804 ~ 33444055 (+) True XLOC_021819
TCONS_00043267 mRNA upstream 442653 33296588 ~ 33309622 (+) True XLOC_021818
TCONS_00043263 mRNA upstream 1219663 32499916 ~ 32532612 (+) True XLOC_021813
TCONS_00043275 mRNA downstream 19777 33777519 ~ 33901337 (+) True XLOC_021825
TCONS_00043277 mRNA downstream 150157 33907899 ~ 33928316 (+) True XLOC_021827
TCONS_00043278 mRNA downstream 176486 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043279 mRNA downstream 190132 33947874 ~ 33953106 (+) True XLOC_021828
TCONS_00043280 mRNA downstream 199608 33957350 ~ 33961989 (+) True XLOC_021829
TCONS_00043271 other upstream 214106 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043268 other upstream 331435 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043266 other upstream 442690 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043265 other upstream 461914 33290273 ~ 33290361 (+) True XLOC_021817
TCONS_00043264 other upstream 633151 33119010 ~ 33119124 (+) True XLOC_021816
TCONS_00043274 other downstream 2005 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043276 other downstream 70923 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043288 other downstream 245015 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 289674 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043296 other downstream 289821 34047563 ~ 34185009 (+) False XLOC_021835

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_03603684_03607612.mRNA True 1178 mRNA 0.45 5 CI01000001 3603346 ~ 3607612 (-)