RNA id: TCONS_00044332


Basic Information

Item Value
RNA id TCONS_00044332
length 2424
RNA type mRNA
GC content 0.49
exon number 18
gene id XLOC_022475
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31764061 ~ 31810391 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCCTGTGATGGCCGTCAAACATGGCGGCTGTGGAGTAAGACGCATGTCTAAACTTTACACTGACAATTAATTTCCAGCCTCGCGTACTTTGTTTACGTGAAAGAAAGCCGTCGAACAAAAAATGTCCCGCCACAGGAATGTCCGAGGTTATAACTACGACGAAGACTTTGAAGATGATGACATGTATGGACAGTCAGTGGAAGATGACTATTGCATCTCTCCAGCCACTGCCGCACAGTTTATCTATTCGCGTCAAGATTCGAGGCAAGCTCGGCATGTGGAGACTGTGGAGGAGGCAGAGTAtgaagaggaagaagaggagatGCCAACCTCTCCCACCATGACAAGCACACTAGATTCACTACAACAAGGCCGGTTGTATTCCTGTTTGGATCAGATGAGGACCGTACTGGGAGACTCAATTCCAGACTCCACATTGACTCAGGCAGCTCTTAAATATGACTGTGATCCTCACCGAGCCCTTGATTTCATTCTGAGCGAGAACACCAATACACAAGCCCCTTCTGCCAGAACCAACCCACAGCTGGAGCCTAACACCACAGCTGCACCACagaaagcTAAAGTACGGGAGGCTCCAGAGAGTCGCGTTGAATCGGAGGTCGTCCCAAAGGTTGCCCGAATGACTGTGTCGGGTAAAAAGCAGACAATGGGCTTTGATGTGCGAAGTGCAGAGGAAAATGGCGGAGTGGCTCCTTCGCTTCGCAGAGGGCCGAGTCCAGAGGCCACTGCTGTACCAACCACAGAAACCCCATCCAAACAGTCGACTGTGACTGAAGATTCTGCTGCTCCGACCCCAACTCGACCATCCGGAAAAAGCAAACAGCAGCTCAACATCCGTGCTGAACTGGAGAAGAGACAAGGAGGAAAACCATTACTCAACCTGGTGGTCATAGGACATGTAGATGCTGGCAAGAGCACTCTCATGGGTCATCTGTTATATCTGCTGGGGAACGTTAACAAGAGAACCATGCATAAGTATGAACAGGAGGCCAAAAAAGCTGGCAAAGCCTCATTCGCCTATGCATGGGTACTGGATGAGACAGGAGAGGAAAGGGACAGAGGAGTGACCATGGATGTGGGCATGACTAAGTTTGAGACTGACTCAAAGGTTGTTACTCTGATGGACGCACCAGGACACAAAGACTTCATCCCGAACATGATCACAGGGGCAGCACAGGCAGATGTGGCAGTGTTGGTGGTAGATGCCAGCCGTGGGGAGTTTGAGGCCGGGTTTGAGGCAGGAGGGCAGACCCGCGAACACGCTCTGCTGGTTCGATCCCTCGGAGTCACTCAGCTTGCTGTTGCTGTCAACAAGATGGACCAGGTGAACTGGCAGCAGGAGAGGTTTCAGGAAATCATCTCCAAGCTCGGCCACTTTCTGAAGCAGGCTGGTTTTAAGGATTCTGATGTGTTTTACGTCCCAACTAGCGGCCTATCAGGAGAGAATCTAACCACTAAGAGTAAAGTAGCAGACCTTACAGCCTGGTACACTGGACCATGCCTGGTGGAACAAATAGATGCTTTTAAACCTCCCCAGCGGTCAGTGGAGAAGCCCTTCAGGCTCTGTGTGTCAGACGTCTTTAAAGATCAGGGCTCTGGGTTCTGTGTGACTGGAAAGATTGAGGCTGGCTACATTCAGACTGGAGATAAAGTGCTTGCCATGCCGCCTAATGAGACCTGCACTGTTAAAGGGATCAGTCTTCATGATGAAGCATTAGACTGGGCAGCGGCTGGTGATCATGTCAGTCTGACTGTAACAGGCATGgacatcatcaaaataaaTGTTGGATGTGTATTCTGTGATCCCAAAGAGCCCATTAGAGCCTGCACGCGATTCAGAGCAAGAATCCTCCTCTTTAATATTGAACTTCCCATCACTCAAGGCTTCCCCGTCCTGTTGCATTATCAGACTGTAAGTGAACCGGCCACCATTAGGAAGTTAGTCAGTGTATTACACAAGAGCAGTGGAGAAGTTCTCAAGAAAAAACCAAAGTGTTTGAGTAAAGGACAGAATGCAGTGGTGGAGATTCAGACACAGAGACCTGTGGCTATGGAGCTTTATAAGGACTATAAAGAACTGGGGCGGTTCATGCTGAGATACGTGGGCTCCACCATCGCTGCAGGAGTGGTCACAGAGATCAAAGAGTAAGAGCCTGTTGGAACTGGATCCTTCAGATTGTACTGACAGAAACCATCAGACTGAAGTGCAATTTCTCCCTCAAAACGTACACAAACATGAAGTGAATACACAAAGATGCCCAGCAGGCAAGCTAACAGTGAATCTAGCCTCAGCTCACGTTACATTTCACAGGCCTCGGGAGGGGAGAGTGAATGTTGGTGTTTGTTTTCTTGTAgtcatttttgtcttgttttcagtacaaataaaaaaagcattcttAAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2987 Predicted to enable GTPase activity. Predicted to be involved in translation. Human ortholog(s) of this gene implicated in beta thalassemia. Orthologous to human HBS1L (HBS1 like translational GTPase).

Ensembl:

ensembl_id ENSDART00000139076

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044325 lncRNA downstream 122682 31644332 ~ 31645735 (-) False XLOC_022471
TCONS_00044312 lncRNA downstream 339722 31427675 ~ 31428695 (-) True XLOC_022467
TCONS_00045034 lncRNA downstream 344895 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00045033 lncRNA downstream 364709 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00044302 lncRNA downstream 474235 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00045035 lncRNA upstream 196677 32006905 ~ 32007796 (-) True XLOC_022480
TCONS_00044345 lncRNA upstream 283720 32093948 ~ 32100014 (-) True XLOC_022481
TCONS_00045036 lncRNA upstream 301090 32111318 ~ 32141320 (-) False XLOC_022482
TCONS_00045037 lncRNA upstream 309462 32119690 ~ 32141307 (-) True XLOC_022482
TCONS_00045038 lncRNA upstream 352206 32162434 ~ 32163181 (-) True XLOC_022485
TCONS_00044328 mRNA downstream 4664 31752604 ~ 31763753 (-) True XLOC_022473
TCONS_00044326 mRNA downstream 75108 31644534 ~ 31693309 (-) True XLOC_022471
TCONS_00044323 mRNA downstream 120391 31643526 ~ 31648026 (-) False XLOC_022471
TCONS_00044324 mRNA downstream 120624 31643740 ~ 31647793 (-) False XLOC_022471
TCONS_00044321 mRNA downstream 122657 31640239 ~ 31645760 (-) False XLOC_022471
TCONS_00044335 mRNA upstream 91122 31901350 ~ 31913289 (-) False XLOC_022476
TCONS_00044336 mRNA upstream 91542 31901770 ~ 31913231 (-) False XLOC_022476
TCONS_00044338 mRNA upstream 96809 31907037 ~ 31913069 (-) True XLOC_022476
TCONS_00044339 mRNA upstream 110612 31920840 ~ 31932076 (-) True XLOC_022477
TCONS_00044340 mRNA upstream 152155 31962383 ~ 31969786 (-) False XLOC_022478
TCONS_00044329 other downstream 13549 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044327 other downstream 50707 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044322 other downstream 120401 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044303 other downstream 422923 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044285 other downstream 1069730 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044337 other upstream 96770 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044348 other upstream 329615 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044359 other upstream 515739 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044367 other upstream 1065318 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044368 other upstream 1408777 33219005 ~ 33219128 (-) True XLOC_022498

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13116492_13136545.mRNA True 1980 mRNA 0.48 16 CI01000001 13116353 ~ 13136628 (-)