RNA id: TCONS_00048001


Basic Information

Item Value
RNA id TCONS_00048001
length 7408
RNA type mRNA
GC content 0.52
exon number 27
gene id XLOC_024222
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 32031536 ~ 32271394 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctgtcacaGCAGTAAGGATGTATACCTGCATCTTTATTTCATAATTACACCTGAACGGTCAAACAAAGGTTTCCTCCCAGTTTCTGGGTCTGCTCGTTTCTGCCGGCTCTGCATAAATCGCTGTAGTCTAATAATTCATTCACAACACCCACTTTACAAAAGCACTTCACCTCAATGCCTTTTAATAACAACAAGGCAAAAGTGGAACATCCCAGATAGGGATGCTGGAGCTGCTGCTGCCGCCGCTCTTTCTCTCGTGTTCCCACCCCTGGAGAGATGCAATGGAAATGTCCAGGCAAACAGACATGACACTGCTGAGGGAAAGAGAGCAGAGTCTCCTCATTCTCCTGCCATTGCAGAGAGTCTGAACACGACATCCCGCCCTCTGCCTCCCTGCAGGTGGACCAACACACCTCCGATCGGATATTAAGCATCAGGACTGCCTTCAGTACAGCCGAATCCGACGCGTCGCATTCAGAGATTTGGCGAGATGTATCCGCTTCATCAGCAATAAGAGGAGACCACTGGCGGTACATGGCGAACTTTACGCTCATCTGACATGTTGCTGTTCATCTTTATAAGAGACCACGACACACTTTAGCCTGACAGAGGCGAAGAAAGACGTGGATTTTACATTCGCTGGGTTATAGCCCCGACATCCCTGTGTTTTGTTGATTTCTTGGAGGCGACAACATTTAGCCTCAACTTGCCTCGGCGCGAGCAGCTAAAGGAACAAAATGTCTGCCCGGGCTGCCTCTAATAAGAGTGCAGCAATGGATGAGACGGTAATATGGGAACAGCACACTGTAACTCTACACAGGGCTCCAGGGTTTGGCTTCGGGATCGCCATCTCCGGCGGACGGGACAACCCTCACTTCCAGAGCGGGGAGACGTCCATCGTCATATCAGATGTGCTGAAGGGAGGCCCCGCCGAGGGCCTGCTGCAGGAGAATGACAGAGTGGTGATGGTCAACGCCGTCTCCATGGACAATGTGGATCACGCTTACGCAGTGCAGCAGCTCCGCAAAAGTGGCAAGAATGCAAAAATAACCATCAGGAGAAAGCGTAAGGTGCAGATCCCGTCAGGCCGGCCGGGTGAACGCGAGACTATGTCAGAGCATGACGAGGACGACGACAGCTACGAGGATGAGATCTACGAGTCCCGGAGCGCGCGAAGCGGACCCAGCGCCTACAGTGGAGGTGGAGGCGGCGGCGGAGGTGGAGGAGCCTCGGGACGGAGGAGCGGCAGAGGCGACAGGCTGAGTGGGAGGAGGGAGCGGGACAGAGAGCGCAGCGGCTCCAGAGAGAGGAGTCTGTCCCCGCGCTCGGACCGCCACTCTGTGTCCTCCAACCTCCCCCCACGGCCAGCCAAAGTCACACTCGTCAAATCCCGCAAGAATGAAGCAGAATACGGGCTTCGCCTGGCCAGCCACATCTTCGTGAAGGACATTTCCCCCGAGAGCCTGGCAGCCCGAGACGGAAACATCCAAGAGGGAGACGTGGTGCTTAAGATTAATGGCACGGTAACAGAGAATTTGTCCCTGATCGATGCTAAGAAGCTGATCGAGAGGTCAAAGGGAAAGCTGAAGATGGTGGTGCAGAGAGACGAGCGGGCGACGCTGCTGAACATCCCCGATCTGGACGACAGCATACCTTCTGCTAATGCCTCGGACAGAGATGATATTTCAGACATCCACTCCGTGGCCTCTGATCATTCCAACCGATCCCACGACCGGAAGAGGAGCAGCCGCTCTCGTTCTCCAGACCGCCGCTCCGAACCCTCAGACCACTCCAGACACTCTCCACCACAGATCAGCAACGGCAGTCACAGGAGCCGTGATGAAGACAGGATCTCCAAGGCCGGGCCGCTTCCTCTACCTGCTAAGATGGTGGAGGAGATGCCGAAAGAGCAGAGCGCAGCCAGAGAAACAGAGAAACAGCTCCCCCCTCTGCCAGAGCCCAAACCTGTGTACGCTCAGCCGGGCCAGCCGGACGTGGACCTGCCTGTTAGTCCGGCAGATGCTCCTGTGCCCAGCGTCACACATGATGACAGCATCTTACGGCCGAGCATGAAGCTGGTGAAGTTCAAGAAGGGCGAGAGCGTGGGCTTGAGGCTCGCTGGGGGGAACGACGTTGGGATATTTGTGGCGGGAGTTCTGGAGGACAGTCCTGCTGCTAAAGAGGGCCTGGAAGAGGGAGACCAGATTCTCAGGGTAAATAATGTGGATTTTGCAAATATCATCCGAGAGGAGGCAGTGCTGTTCCTGCTGGATCTGCCCAAAGGAGAGGAGGTCACCATCCTGGCCCAGAAGAAGAAAGACGTGTACCGCCGCATTGTAGAGTCTGACGTGGGAGACTCGTTCTACATCAGGACTCATTTTGAATATGAGAAGGAGTCGCCCTATGGCCTGAGCTTCAATAAGGGGGAGGTCTTCAGAGTCGTCGACACCCTTTACAATGGCAAACTGGGCTCCTGGCTCGCCATCCGCATCGGCAAAAACCACCAGGAGGTGGAGCGGGGCATCATCCCCAACAAGAACAGGGCTGAGCAGTTATCAAGTGTCCAGTACACTCTCCCAAAGACTCCAGGAGGGGATCGCGCCGACTTCTGGAGATTCAGAGGCCTCCGCAGCTCCAAACGAAACCTGAGGAAGAGCAGAGAAGACCTGTCTGCTCAGCCGGTCCAAACCAAATTCCCTGCTTATGAAAGAGTGGTGCTTAGAGAAGCTGGTTTCTTGAGGCCAGTGGTCATTTTCGGACCGATCGCGGATGTGGCTAGAGAGAAGCTGTCCAGAGAGGAGACTGACCTCTTCGAACTTGCAAAGAGTGAACCCAGAGATGCGGGCACAGACCAGCGCAGCTCCGGAATCATCCGTCTCCATACCATTAAACAGATCATTGACCGAGACAAGCACGCGGTGCTGGACATCACCCCTAATGCGGTGGACCGTCTGAACTACGCTCAGTGGTACCCCATCGTGGTGTTTCTGAATCCAGACAGCAAACAGGGCGTCAAGAACATGAGGACCAGGCTCTGTCCCGAGTCCAGGAAGAGCGCCCGAAAGCTCTACGAGCGTGCTCTCAAACTGAGGAAGAACAACCATCACCTTTTCACCACCACTATTAACTTGAACAACATGAATGACGGGTGGTACGGTGCTTTGAAAGAGAGCATCCAGCAGCAGCAGAACCAGTTGGTCTGGGTCTCAGAGGGCAAGGCCGACGGCGCTCCTGACGATGACCTTGACATCCATGACGACCGCCTCTCCTACCTCTCGGCTCCGGGCAGCGAGTACAGCATGTACAGCACCGACAGCCGCCACACGTCCGACTATGAGGACACCGACACGGAGGGTGGTGCCTACACCGACCAGGAGCTGGACGAGACCATGAACGATGAGGTGGGCCTGCCTAGCGAGCCTGCCATCACACGCTCATCTGAGCCTGTGCGAGAGGACCCGCCAGTCATTCAGGACGCAGCTGGATACCCCAGCTACCAGCATGCGGTACCGCAACCTGAAGCGGTGAGCCGCATTGACCCGGCCGGGTTTAAGATGGCAGCGCCGCAGCAGATGTATAAAAAGGATCTGTACAGCATGGACGAGCCGGTGCGAGTGACCCACGGCGTGAAGCCTCCCCCtccccagcagcagcagcagccttTAGGCCCCCCAACCTCGCTCTCCTACAGCCACCAGCCTGTCTACCAGGACCAACAGCCATACCGCCAGTACGACCACCCGCCTTATGGCTATGACGGTGGCGGCTACGCACAACCAAAGCCTCACAACTACGACCCGCACCTGCACTACGACAACCGTGTGCCTCACTATAACGAGCAGTGGCCCACGTAcgaccagcagcagcagcagcagacttCCCCCCAGCCGCCACCTGCGTCCGGCTTCCCTCAGGGCCACCAGCCTCCGCCTCCACCACCGATGGGATATGAGCCACGCTCCCCATACGAGGACGGACCTAACAGGGATTTCAGCCCTCCTCAGTCCCAGTATGACGGTGTGTCCCCAATGGGCTACGATCACCGGCCGCGGCACCCCAAACCTGCACCGGTCCGATATGAAGAGCCTCCACCTCCACCTCCTCCGGTGTCCTACGATGCACGGTCACCTTTCGAACCCGAGCCGCATGCTTTCCCAGGCAACACACATCGCTCGCCAGACCCACCGAAACAGTATTATGGAGACGCCGCTATGAGGCCCTTGTACAACCCTGGACCTCCGAACAGAGTGTACAAACATGAGCCGGTGAACTCTGAGCCTCCTGTACCGCCTCCCAAACCTGAATCTGTCCTGTCTCCAGGAGAACCGCCCCATTCTGCAGCTTCCAAACCATTGCCGCCTCCTCCCAgagatgatgacgatgatgatgacgatgatgatgacccTGCCATGAAGCCCCAGTCTGTGCTCAACAGGGTCAAAATGTTCGAAAACAAACGCTCTGTGTCGGTAGACCGAGCCAAGGACGCACCTGACGTCACTGGAATTAGGCCCACAGATCTCCCCAAACCTGCGAGCACCCCTGGACCTGTGCTCAAAGCCAACTCTCTCAGCAACCTGGAGCAGGACAAACCCTCCTACAGAGCTCCAGAGCCGCAGAAACCTCAGACGCGTGTTGGGGACGATGTGGTTCGCTCCAACCACTACGAccctgatgatgatgaagagtacTACAGAAAACAGCTCTCATTTTTCGACCGCCGCAGTTTCGACAGTAAGGTCATGAATCCACCCAGCGCTGGAGTAAACCGCTTCCATGAGCCGCCCAAACCACCCCAGACACAGATCGCTTATCCTTTCGCTAGGACGGAGTCTGTGGAGAAGGTGAGTCCTGTGGACAAGAGATACGAGCCTCTGCCGCCAGTCAACCCTTCACCTGCTCCATACAGCCAGAACACACCTGTCGCTCCGCCCACATCCCTGCCCAAACTCACCAACATCGAGGTGAACTCTCTGCCAGATCCTCACAGCTCTCCCAAAGCCAAACCGGACCTGTCTGCTCTGAGAGCTCCGACCCGGGACGAGCCCATCCAGAGCAGCTACTTGCCCCCCAAGTCCACCATCAATGGCATGGATGCTCCTCCCAAAACACTCGGCGTGCCGACCAGCTACAACCGCTACGTCCCCAAGCCTTACACCAGCTCGGCGCGACCCTTCGAGCGCAAGTTCGAGAGTCCGAAATTCAACCACAACCTGCTTCCCAACGACACGCAGTCCAAACCCAGTGTCAACAACAACCTGAAGCCTCAGATCTCCCCACAACCCCAGGACACGGACAGCGGCGTCGACACCTTCACTCGCACCATGGACAACAGGCCAAAATATCAGCACAACAACATCAACGCCATTCCCAAAGCCGTCCCAGTCAGCCCCAGTGCActggatgatgatgaagaagatgagGGACACACAGTTGTGGCCACGGCGCGGGGCATCTTTAACTGTAATGGCGGGGTGTTGAGCTCTATAGAGACGGGCGTCAGCATCATTATCCCACAGGGAGCCATTCCTGATAGTGTGGAGCAGGAGATCTACTTCAAAGTGTGCCGGGACAACAGCATCCTGCCTCCTCTGGATAAGGAGAAAGGTGAAACTCTGCTGAGTCCGCTGGTGATGTGTGGTCCTCACGGCCTGAAGTTCCTGAAGCCTGTGGAGCTGCGCTTGCCACACTGTGCGTCTATGACCCCTGATGGTGACCCCAAATGCTGGCAAAACAAGTGTCTACCAGGAGACCCCAATTACCTGGTGGGCGCAAACTGTGTGTCTGTGCTGATCGACCACTTCTGAAGAGAGAAACAGCTGGTCTGTTCCTGAAGGCTCGCATTATCAAGTATTatttctgtcctctttctcagaaAAACGTGGAGGATGTGACTGGCTGCGGAGCGCTTTCCTATtcccttttctctctctccctctttttttttttttttttgggttcagTTTTGCCTTTTTCTTTACCTTTTGGTGCTTGAAGACTTGCaaaaaattactgaataaataaatgagtaaataaatgaaggaatggaACTGCTAATGGGATGCATGACCTGTGCCACAGACGCTGggaaaaataattagaaaaagcTGGAACGCAAGCGCGGGGGGAAACGGACGGATGATGAATTAGTTTTGCGTGAGACGTACTTGATGTGCAGAGAAGTTGCTGTATGTGTGAGTTTGGTCATGTGGAATCGCCGTGATGAAAAGCATGTCGCTCTCTGGATATtgaagatgtttttatttttacttgagttGTTTTGTGGAAGATCTGTGACTGTTGCACTCGTCTGCTCATGGACTTCCCCTCCGGCtatgaagaaaatgaaaaactccagaaaagaaaagaaaaaatgggCTCTTTCTCTCAACCTTTTGAAGCGATCTTTTCTAGCGATGTTTTACCGTAGATAAACACTGACTGTGGTTTTCCGAAACTCCTGCTGTCTAGAGATCTATGCATGTGCTATGACTCAGGTCCAAACGCCTGCTACTAAGTTGAGTACACGAACCTACCCATCATACACTGCAAGCAGTGATGCCTTAtctgcattttctttttgttactTTCGACCCGAAGCAAACGTCACACTTGGGTTACGGAGGGAAGTTATGAAGGACGGTATTTAGCACACAACTAACGAACAGGTCTGCTTTTTCACCCGCTATGCATATGAAGTCAAAGAATATACCAGAAGACTAGGATATGTTTCAATTACCGCTGTAAATATTGTGCTAGCATATGGCCTTGGTTCGCTGTAAATGACTTTTCTACATCTttgttattttgtataaaaaaaattaaaaaaacgtaACGGGGAAGAAAAAAACGtttcttaacaaaaaaaaaaagaggaagactCTAACATTGGTTATGTTTGTATTCCGGTTATACTTCTGAGCCTTGGAATTTAGCAGTACGGAGAAGATTTAaaccaataaaaacaaaacaaaaactaaaaaacgtAAATAATAAATGCAACGAAAAAGACGTTATCTTTTATACCAACGACGCgcgtatatatataaatatatataaacgaaCACACTACTTAATGGCATTTTTAAACCGTTCCAGAACATTTTTATGATTTACAAACTAGAGACGTGCTCGCTTTCAATAATTTATGGACTCGCTTTGGAGGGCGAACCCTGATTTATTTGTGATACTGGATGCTGTATTGTGTGCcctgaaatgtatttttgtacTAATAGACAGTTTATTAAGGCACATCAGTACCACTTTGTTTTGATATGACGACGTACGCGGCTTCATCCCGGGTTTCGTTTAGTTTCTTTTTGTGTGGCGACattatgattttgttttctttgcagcaCATTTCTAACGTATACaactgtattaataaataaattcatttttcaaTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0090557 establishment of endothelial intestinal barrier biological_process
GO:0098609 cell-cell adhesion biological_process
GO:1905605 positive regulation of blood-brain barrier permeability biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0016264 gap junction assembly biological_process
GO:0007416 synapse assembly biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070925-1 Predicted to enable cell adhesion molecule binding activity. Acts upstream of or within gap junction assembly and synapse assembly. Predicted to be located in membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including axial mesoderm; cardiovascular system; epidermis; nervous system; and pleuroperitoneal region. Orthologous to human TJP1 (tight junction protein 1).

Ensembl:

ensembl_id ENSDART00000112588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049267 lncRNA upstream 653857 31497318 ~ 31503469 (+) False XLOC_024218
TCONS_00049269 lncRNA upstream 653857 31501867 ~ 31503469 (+) False XLOC_024218
TCONS_00049268 lncRNA upstream 653857 31501867 ~ 31503469 (+) True XLOC_024218
TCONS_00047992 lncRNA upstream 747452 31405271 ~ 31409874 (+) True XLOC_024217
TCONS_00049266 lncRNA upstream 761645 31388117 ~ 31395681 (+) True XLOC_024216
TCONS_00049059 lncRNA downstream 758224 33029618 ~ 33036104 (+) True XLOC_024229
TCONS_00049270 lncRNA downstream 1073400 33344794 ~ 33348735 (+) True XLOC_024234
TCONS_00049271 lncRNA downstream 1135726 33407120 ~ 33439620 (+) True XLOC_024235
TCONS_00049060 lncRNA downstream 1229951 33501345 ~ 33503564 (+) True XLOC_024236
TCONS_00049061 lncRNA downstream 1334207 33605601 ~ 33609953 (+) True XLOC_024237
TCONS_00047998 mRNA upstream 138336 31958911 ~ 32018990 (+) False XLOC_024221
TCONS_00047997 mRNA upstream 138336 31958911 ~ 32018990 (+) True XLOC_024221
TCONS_00047996 mRNA upstream 171839 31958911 ~ 31985487 (+) False XLOC_024221
TCONS_00047995 mRNA upstream 216085 31929325 ~ 31941241 (+) True XLOC_024220
TCONS_00047994 mRNA upstream 221509 31912153 ~ 31935817 (+) False XLOC_024220
TCONS_00048002 mRNA downstream 119400 32390794 ~ 32400209 (+) True XLOC_024223
TCONS_00048003 mRNA downstream 201883 32473277 ~ 32495363 (+) False XLOC_024224
TCONS_00048004 mRNA downstream 202039 32473433 ~ 32483732 (+) False XLOC_024224
TCONS_00048005 mRNA downstream 202637 32474031 ~ 32485787 (+) True XLOC_024224
TCONS_00048006 mRNA downstream 225329 32496723 ~ 32519415 (+) False XLOC_024225
TCONS_00047980 other upstream 1175879 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00047979 other upstream 1185366 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047974 other upstream 1819337 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047963 other upstream 1980767 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047922 other upstream 3653361 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00048011 other downstream 311346 32582740 ~ 32611439 (+) True XLOC_024226
TCONS_00048019 other downstream 867681 33139075 ~ 33139200 (+) True XLOC_024231
TCONS_00048028 other downstream 1457890 33729284 ~ 33729398 (+) True XLOC_024238
TCONS_00048029 other downstream 1509119 33780513 ~ 33780628 (+) True XLOC_024239
TCONS_00048052 other downstream 2504164 34775558 ~ 34789619 (+) True XLOC_024253

Expression Profile

//