RNA id: TCONS_00049877


Basic Information

Item Value
RNA id TCONS_00049877
length 4101
RNA type processed_transcript
GC content 0.43
exon number 2
gene id XLOC_025264
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21025153 ~ 21030873 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTACAGATTTCTCCCAGCACAGTCAACCTGCAGGGCACTGGAATGCAAAGACTTTAGCCCACACAAAGAGGAGAGGAAACAGAGTGAGCACTGAGACTCTGAAGACCTGACAACCTACATGCCTCCATGGGGAACACCAGTTTTACGGAAGGGAAGACTGCCCTGTCTGTGGGTGGCTCTTCAATAGCCAGGGGAAAGACTTCCATCACAATGGGCAAATCCTCCATCACCCGTGGGGTCACCACTACCTCTATGGGCGACTCTACCATTACCAGAGGCAAAACCACCATCTCCCTGGGCAGAGCCAGCTTTAGCAGAGGCAAAACTACAACCTCCATCCGTAAGGCCTTCATGCCCAAGCGCAGGACCAAATAGATGGAAAAGAGATCGGCATACGCTGAAACAAAGAGCAAGACTTCAACGGCAAGGAAGAGCACTGAGAAGGATGAGACAACAGATCTAGAGCAAGAGGAAGACTCAAAAGCCTCAAAAGGAAAGGCTTCTCTTCTACTAAGAAAGACTTGCTTTACAAAAGGGAAAATCAGACTGATGAAAAGCAAAAAGGCCATCTCATGGGGGAAGACGCTTCTTTCGAGGAGCAAGACCAAACTGAGGAAGGGAGAGACTGCATTTGTGGTGGGTACAACTACAATCACTCATGGGGAGACTACTAGTTCTTTGAGCAAGGCCACTTTAAGTCAAGGGGAGAAGTCTGTCACTGTAGTTAAGACTTCCCTCAAAAGAGGCAAAGAAAAGCAATGGAAtctctactgggattttcatctGTGACTTAAAGACACAAATGTAACTACAAACAGTATATGTACAGTGTATGTGTATATTTCCAGAAAGACTGACTCTGAAGTAGAGGGTACAAGAAGGTTGGATGTCTTGTGAGATGCAAGTGTTTGCCAGCATGCCATAGAATAGCACACAAATGCATTCTAAAGGGCAAAACGAAGTGTATGTGTACTATAAATTAGCTTGGAATAAGAATGATGTCTTTGTCCCTGAAGGAGAATTTAGTTGATTTGAAGATAAAGACTTGTACGAGAGAATATGTTCAGATACCAGATGCCAAACTGGTGTACATGAAGAGAACATGCATGCATGGATGTGTGAGGGTGTGCACTGCCACAAGCTCTTATTGTTCACATGCAGAAGGGTTTGAGTTGGATGATCCAGATCTGGATCTTGCAAGTGGAATTGTGTTAACTAGTTAAACAAAACTAACCAAGTCATAGTAAAAAGTTTATgaaattaattgcaattaaaatgtgCCTTGTTAACAGACCTCTTAATCTTGCATTAGTGTAAACAATATCAACCAGTATAACAGTGAATTAAGTCAGAATTGTCAATAAATAGACCTTTAAAATGGTTCAACATTCTATGTGTCTCTCTTTAACAAATCAGAGGGTTCCTAAGCAGGTCACACACTCACCAGAAAGTATGATATGAGCCTAGTCGCATCTTGTGTTAAAGGCACAGCACACTGTGCTGCTATTCTTATGTCAGACTGCACAATCATAGCCAAGACATTCAGGTATAACTAAATTGACTACACATATCGGGAATCTGACATATGAAACACGGGAAAGTAGATTACATCCTTGTGTTTCAGCCTCAGTAAAAACAACACCTTTTTAAATGCCATGTACAGTACAACTCAAGGCATTGGATAGCAGTTCTAGGGAGGCACAATGCCACGGAACTGAGTGATGTCACCACTGATTGTGCAGCTCAACAATGTGTTCTTCAGTGCCTCGCTTTAGCAACGGTACAATGCGGTCTACTGTCCGCTCTGCCCCCAGATAGAACTAAGGCCTCCTACGGCAGCCTCTGTCCATTCACGGCACACAGGGTAGGTATGTGGCCTTGCGAAGCCCACGTTACACTGCTCAACAAGTGCTTTATGCTGCTGCATGGGGGTTGCTCTCACCACGCATAGCATTCTGGTTCCATCCTGACACTAGCTGTTTGGACTGTCACACCCAGCCGGGCACTGCCTGAGTGTGTTGAGTGGTGAGATGCGACGCTGCCAGGGCATACGATGAGCCACCATAACCTCATCGTGTAGGCGCAGGAGACCTCAAGATTCCCAAGGGAGCATAGAAAAAATCTAACCCTGAACGTGCTCCAGGTCAGGTTATCAAGGCTGGCTGCTTGAGGGGACCTCCTGGAGCTTCTCCACCACTTTCGGATTCGCCATGGGTAACACGAGTATCACTGAGGGCAAGACGGCCCTGAACCTGGGAAGCACATCGATCAAGAGAGACAAGACCAAGATTTTGATGGGAAACTCCTCTATCTCCCGCGGGAAAAGCACAACATCCCTGGGCTCCTCCACCATTACCAGTGGCAAAATGAAGATTTCCATGGGTGCCGCCTCTTTTAGCCGAGGCACCAAGTCTACGTCCTTCCGAAAGGCTTTTTTGCCCAAGAGGAAGACTCTTTAACGGGAAGTAAGGCTAAATCTATGGGGAGGGTATAGGGTGCTGGGTGTGGGATGTGGGGACTGTATCACCAAgctgggaaaaaaagaaaacaaaagcaaatatcACCAACAGCCAagaaaacatcatcatcatcatcatcatcatcatcacagtgTACTTTCTGTGGAGATAATTCACTGAATCTTGCATCGCTTTCTtgccattgcaaaaaaaaaaaaaaaaacctttacctTTCGGAACAAGTTTCTTATTTTGATTTCATTACTTGGGAATACATCATGAATGCAGAGTTCTTGAATCACCGGAGTCCACACCTTTACATTACTAGCTTCAGCTGTCCGGAAAACTTTCTCAAGGAGATGCGCTAAACTGGCCATTCCATTTTTATTGGAAAGTCAAGACATGAGAACATCGACAAGAGCTGATCTTTGACTGCTGGAACTCTTACCTCTCAACTTTTGACCAGGGAGGCAGCCATCATGCCCTATTGTACCCTACAATGTGGTTTTGCCCTTTAGTGACAATGCCACAGCCATCCATTGTTACAGATCTTATGGAAACCTCAATCCAAAACATCTTACATTGGACTCAAGGTATCCCGATAGtaaaaaccaaccaacaaacataTATAAACGTATCATGAGTGCCCTTATTTTGAAGCTtttttatttagcctgacatttgTTTAGTCTGAGTGAAAAAACTGATGAAACTGTGTGACTGTCTCTAGTTATATTATGTCAATGATCTagactgtatactgtatgtgtaacCATTGTAGAAGAAGCATGCGAAAAATGCGAAATCACTAATGCTTTTGATCTTAGCATTGAAGGAACTGGACGGTGGGTGGGTTATGGTGGGGAGTGAAATTAACCATGTTTCTGTTGGTCAGAACCCTTCTCCGCAATGTCAGCAACTCTCAGTTTTAGCAAAGATGCTTCAGATAAACACACTGGCTCAATTTGGGATTTACTATGAAAACTacacccccccccctccctctGGGTAAACTAATTGGCAAGTTTAAACACTCCAGAAATTCTACCTGGTTAAAGTTCGTTATAGACTATTCAACAGCTTTCATAAATAAGCATTTACACTGAGAGACATGACAATGGGAATGAGGGTTTGATGATTGAGAGTGAAGGAAATAAAACGTAATAAACTCCTGATCTCAACCTACCAGAGAAATACAGACACATGACAGAGACACAACATGTCCCCCCTAAGGGAAATATAAAGTAACTGAGCTAATCGTGATCCAATTAAATTAAGAACTGTTTGAGATTTCTTTGCTAGCAGCCTTTAATtgtaattcagatttttttttcttgtcaagtCCTGTGTCGCTTGTCGTTAAATGTTACAAACAGCTCTGGCGTGGCCGCATGAGGGATGTGGGTTGTAGAAAAAGGCCTCTGCCCTTTTCAACAAGAGTGTCTTTGTGTTTATAATCATCTGTAAGGTCTGAAGTCCATTTTTGTCATTCTTTGTTGTTCATTTTTTCACCATGCATTTGCATAGTATGTGTTTCATGTGTTTAACAACTCCTACGTTATGTCATCCCGATGGTAGAACCTTGGACAGTTCGGTTCTAACCACTGTGCTGTATgcttaataaatatttgttgacattaa

Function

GO:

id name namespace
GO:0043209 myelin sheath cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8155 Located in myelin sheath. Is expressed in nervous system.

Ensembl:

ensembl_id ENSDART00000166162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049875 lncRNA upstream 109999 20913310 ~ 20915154 (+) True XLOC_025263
TCONS_00052638 lncRNA upstream 515640 20491202 ~ 20509513 (+) True XLOC_025261
TCONS_00052335 lncRNA upstream 826534 20198302 ~ 20198619 (+) True XLOC_025259
TCONS_00052637 lncRNA upstream 960421 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00052639 lncRNA downstream 26981 21057854 ~ 21066838 (+) True XLOC_025265
TCONS_00052640 lncRNA downstream 106222 21137095 ~ 21143371 (+) False XLOC_025266
TCONS_00052641 lncRNA downstream 107713 21138586 ~ 21143371 (+) True XLOC_025266
TCONS_00049879 lncRNA downstream 158931 21189804 ~ 21192947 (+) True XLOC_025267
TCONS_00052642 lncRNA downstream 215024 21245897 ~ 21251807 (+) True XLOC_025270
TCONS_00049873 mRNA upstream 563451 20404912 ~ 20461702 (+) True XLOC_025260
TCONS_00049872 mRNA upstream 793372 20156956 ~ 20231781 (+) True XLOC_025258
TCONS_00049870 mRNA upstream 1003557 20012891 ~ 20021596 (+) True XLOC_025256
TCONS_00049869 mRNA upstream 1013346 20001608 ~ 20011807 (+) True XLOC_025255
TCONS_00049868 mRNA upstream 1053379 19914332 ~ 19971774 (+) True XLOC_025254
TCONS_00049878 mRNA downstream 158893 21189766 ~ 21198744 (+) False XLOC_025267
TCONS_00049880 mRNA downstream 169890 21200763 ~ 21218133 (+) True XLOC_025268
TCONS_00049881 mRNA downstream 194877 21225750 ~ 21230668 (+) True XLOC_025269
TCONS_00049884 mRNA downstream 638672 21669545 ~ 21889616 (+) True XLOC_025273
TCONS_00049886 mRNA downstream 1004990 22035863 ~ 22057600 (+) False XLOC_025275
TCONS_00049874 other upstream 345115 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049853 other upstream 1670215 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other upstream 1675336 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049850 other upstream 1712046 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049843 other upstream 2083439 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049893 other downstream 1028440 22059313 ~ 22061088 (+) False XLOC_025275
TCONS_00049913 other downstream 1538114 22568987 ~ 22569106 (+) True XLOC_025283
TCONS_00049938 other downstream 2204795 23235668 ~ 23239458 (+) True XLOC_025294
TCONS_00049946 other downstream 2642504 23673377 ~ 23673455 (+) True XLOC_025303
TCONS_00049951 other downstream 2663283 23694156 ~ 23696013 (+) False XLOC_025306

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU195584 False 4419 TUCP 0.43 2 CI01000034 3391513 ~ 3397813 (-)
bowfin (Amia calva) TU195584 False 293 lncRNA 0.49 2 CM030142.1 12702137 ~ 12702641 (-)
mexican tetra (Astyanax mexicanus) TU195584 True 442 lncRNA 0.44 1 NC_035912.1 26607344 ~ 26607785 (+)
mexican tetra (Astyanax mexicanus) TU465569 False 6412 TUCP 0.42 3 NW_019172936.1 36033 ~ 43516 (+)