RNA id: TCONS_00050341


Basic Information

Item Value
RNA id TCONS_00050341
length 6442
RNA type mRNA
GC content 0.45
exon number 17
gene id XLOC_025546
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35406395 ~ 35421194 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACATTGTTCAGGCCTTGCTTCAAACTACGTcggtttgtgttttttgttgttgttgaaatttGGACTGCGCCGAACAAACATTTCGGAGGAACTCATTTCGGACACCGAGGCGACGTTATTGACTGGACTCTACACGTTCACCCATACGGACACCGTTTGAACTGTATATTTCTTGATCAGAGTTGGACCTTACGGACAGCTCACGGCTAACCGCCATATGGTCTTGGACATTGAAACCCGGCAGGAGAGTTTCTGGCTTCTTGCTGGGAAATTCCGTGGACTTAAATCACTTGCGTCATAAAGATTGCGTGTTGCATTTGATCACGGTCTTTCTGAACACTTGCTATTTTCAAATCGCAGTTGCTATTCACGTGAGGCAGAATCCACACGACCTCCTTAGTGGAGACCTTTTGATTTAACAAAAGAGTGTTGAGATGATGAGCAAATATGGCTATTATTCTTAAACTGTTAAGCTGATAAACTGATATTGAGTAAGGTTGATCGCTGGGAGAGCCCACGCGATCGGGCGAGTTGTAGTTGAGTTTGGTTGTGTGTGGTGGTGGTGTCTGACCACAAGGAGTGTTTAAACATGTCTTGTGTCCATTACAAGTTTTCTTCTAAACTTAACTACGACACGGTCACCTTCGATGGCCTTCACATCACGCTCAGTGATTTGAAACGCCAGATCATGGGGCGAGAGAAGCTGAAGGCCGCGGACTGCGACCTGCAAATCACCAACGCTCAGACTAAAGAAGAATACACTGACGATGAAGCCCTCATTCCTAAAAACTCGTCTGTCATCATTAGACGAATCCCTATTGGAGGGCTTAAGtcgacaagcaaaacatatgtcATcGATCGTTCTGAACCAAGTGGATCTTCAAAAGCAATTGATTCTTCATCCATTTCACTGGCCCTGCTTTCAAAGACAGCCAATCTTGCTGAAACAAATGCATCAGAGGAAGACAAAATAAAAGCAATGATGTCTCAGTCCAACCATGACTATGATCCAATCCATTATGCAAAGAAGCTTGTTGGTCCGCCTCCACCAAACTATACATGCTTTCGTTGTGGGAAAACTGGACATTACATCCGAAACTGCCCAACAAATGGGCAGGATAGAAGTTTTGAAGCTCCTCAACGGATAAAGAAAAGCACAGGAATACCTCGGAGTTTCATGGTGGAGGTTGATGATCCAAACAGAAAAGGTGTCATGTTGACAAACAGTGGAATATATGCCATTCCTACTATTGATGCTGAGGCCTATGCCATTGGCAAAAAAGAAAAGCCACCATTCTTGCCCCAGAATCAGTCCTCATCCTCAGAGGAAGAAGATCCAGTACCTGATGAGCTGCTGTGCTTGATCTGCAAGGATCTTATGACAGATGCTGTGGTTATTCCCTGCTGTGGAAATAGTTACTGTGACGATTGTATTCGAACATGTTTGCTGGAATCTGAAGAACATGTTTGTCCAACCTGCAAACAATCAGATGTATCCCCCGATGCCTTGATTGCAAACAAATTCTTGCGCCAAgCAGTGAATAACTTTAAGAATGAAACTGGATATACCAAGAGGATTCGAAAAGCTACAGCTACTCAAGCAGTTGCTCAAGGAGCTCAAAAACAAGCTCCTGCTCAACGTCCTCCTATGAGACGCCAGCAGGATCCTCTGATACCCAGTGTTCCAAGCTCAGCGGCTGATAGCACCCCTCCACAAAGCACACCTGCTGCCCCTTTATCTCCTGTTAGCACTCACGAGCCTTCCAGCACCCCACCTTCTTCCAGCAGCTCTACTGTACACAGCAGCACTGCACCTGCAGGGTCAAACTATAGTCCTGTGGTAAACTCTCCTCCGCACCCTACTAGGCAGGATGACCCTCCTCCATCCAAAGAACCAGAGACcccaccatctgctgttataccTTCATCTGAGACATCTATGTCTACAAATTCTGCTGTTCCAAAGGGATATCATGTCCCTGTAATTGGAAAACCGAGTTTGCCTCAGCAGCACATGCACAGACCAGgaCCCCAAAGGAGTAGTGGTCAAAGGCCATCTGGAAGTCGTTCTGGATGGGATCCGTCCACGAGTAGAGGTAGACTTCAGAGTGAGAGGCCACCAAGAATACAGCCTCAACCAGTGCAAAATCTTCCTCCTGTAGTCCCTCCAGTATTTGTGCCCCCTGCTCTTTTTCCACCTCCTCCACATCCTATGCCACAGCCACCTGTTGTTGTTTCTCAGCAATATCCCATACAATTTCCTCAAGGACAGCAGCCACCACCTCCTTCCTTCAACATTCCTCCTCCTGTATTTCCTCCTGTTCCACCTAATGTGACTGCTCCATGGGTGCCTCCTGGCCCTCAGCCACCTATAGCCAACCCTATCTCTGCTATGCCAGCTGCACCTTTTCTATCCAAGGAGGAGTTTTATCGTCAGCAGCGTCGATTGAAGGAGGATTCCCAATGTCGATTCGTTACCAGGGAGAAGTCCAAACTTGAGGAGTTCACCAATGACTTTGCCAAAGAGCTTTTGGAGTATAGAAAAATCCAGAAGGAGAGAAGGCGATCCTACTCGAGATCACCTCGCTCCTATTCTCGGTCACTATCCCGATCACGGTCAAGATCCCGTTCACGGTCTCGTTCTCGATCACGCTCCTTCTCTCGCTCACCATACTCCCGCAGGCCTCGAGGTCGAAGTCGTAGCTATCGATCAAGGTCACGCACTCCAACATTCCATCGTTCTCGCAGTAGATCTCCATCATATAGAGGTCGTGAGATGAGTGGGATGGTAAGTGGCATCTACCGTTCCCGCTCTCGATCCCCCATGTATAGAAATCATAGTCCTGGCAAGAAACTCCCACCACCAGCTCAACTGGAAGGTGAGCGCAAATATACAGGAAGGTACAGAGAACTCCCGCCTTATGATGCTAAGGCTTATTATGGCCGAAACGTAGACCAGAGTGACCCTTATGAAAGAGAGCGATACAGAGAGTGGGAAAGAGAGTACAGAGAGTGGTATGACAAGTATTTCAAGAATTATAACAACCCACCAAGTGGTCAAATGCGAAGCCGTGTTCCAGGCAGCAGAGATGCCTATAGCCCTGAGCGTTTTGCTCCTCCTCGACCCAGAGAGAACTCCCCCTACAACAGGGGACGCCGAGAGGATTATCCACCACCACCTCAGAGCCACAGTGCCCAATCAAGAGGCAGAGTTGCCATGACATACCAAGAGAAGTGTGCTGAGAAGTTTGGCCACCTTCATGCCAATACCACTGGAACAGGCAGAAGTCTTAACAAAGAGCCTTTGAAACCTATCAAAGATCGAGAACAGAGTGGCAACTCAGCCACAGACTCCAAGTCTCTGAAGCATAAGAAACATcgcaaaaaaaagagagaggatGGTGACCTCTTTAGCCACTCTGACTCTATGGATGAATCCAGGAAAGATGATCGTAAGATGGACTCAATGCTGATTAATTCAAGCCGAGATGATGCCACCCCTGTAAGGGATGAGCCCATGGACGGTGCTGCTGTGCCCTATAAGAGAAcccctgaaaaagaaaaaaaagaaaagactaaAAGTAAATCTGAAAAAGTTAAGCGAAAATCTGAAAGCAGTGGCCAGAAAAAAGAAGCATCAGGAAAGACATCAAAGTCAGCCAGAGAGAAAGAATCAGATGCACCACGAGAGAAGGTAGCTTCCACTGGACCAGCCATAAAGAGAGTCAAAGAAGAACCTCCCCATAAATCTGAACCAAGCAAGACTCAGTCCTCAGACCCCAAACTCATGCTCCCACGCAAGTTAATGCAGTCAAGGCCCCTCAAACACCATCAGGAGCTGAAGGCCATCAAAGATGAGATTAAAAGCAAGAAGGACTTGGTGAAAGACCCTGCAAAGCAAGACAAAGCTTCTGGCAAAGATGGAAAGGCTTCCAAAAAAGATCCAGAGAAGCCTTTTAAAATGGAGGAGAAGATACCTGCCAAAGTTGTTGATGCCAAACAGGATAAAAAGAAACGAAGAGATGACAAGTCATCTGTAAAAGATCCAGATGGCCCTCCTGTAAAAGTTGCTAAAATGGAAACTGATGTGGTGAAGACCTctcccaaacctaaacccaaactGGAGAGTGAAAGGCCAGTTGAGAAGGACAAACCAGCTATTCCCTCTCTTCTAGATATCAAGCCAGAGCCTGTAAGGAAAATTAAAATCAATAGGGAAATTGGCAAGAGAATATCTAGCACTGATCGACCAGTTTTAGCTGAGGACTCCGCTCATGGCCCTGGAAAGGGCAGGCTTGATAAGTCAAGAGGAAAACTGAGGAGGAAGGTACATGCTCCGGATGGATCAGGGTCTTTACTTGTCGATTATACCAGCACCAGCTCTACAGGTGGAAGCCCCATCAGAAAGCATGAGGAGAAGATTGACTTAAAGAAGACTGTTGTGAAGACCCTGGAAGAATACACCAATGACAGCTCCACCCCTGCTGAGGATGAAATTGTAATGATACAAGTGCCCCGTTCTAAGTGGGAAAAGGAGGACTATGAATCTGAGGATGATGATTCTAAGGTTCTCAACAGGACGAGCAGTGCCGATACATCTGTCGCTGCTCCTTCAGTGGAGAACTCTGCTGTGAAATTATCTGACAAGGAGTCTCCCCATTCTGACAAAGCCCAATCTACCTTGAAAGAGGCTGATGTCAAACCTGCCAAAGACTCCACCTCAGGTGATAAGGAGAAAGATACTGACAAAGACAGAGAACGAGAAAGAACCAAAGAAAAAGATCGCAGCAGCACTACAGATCGTGAGTCAACTGATAAAAAGAAACCTAGTGTACCTAATCAGGAGAGCGCACATGCACAGGAGAAAGGCAGTGACCATGGCAGTGAGCGGAGCTCCTCTTCTCAGTCTTCTAGAGACAGGCAGGCTGATAAAGCTGAACCAAACTCTAGAAAGCCAACAGGTAGGGAGACGACTACAGGCCCCACCAGTAGGAAACCAGAGCATAGAGATGATACAAAAGACCACTTGGGTACAAGATCAAAAGATGAGAAAAATCCAATCAGGAGAATACCATCATCCCCACCATCAAGGGTGAAGGACTTGCACAAAGACTCTGGGAGAAAAAATCTTGAAGCACCTCAAGAGTCACAAAGTCCAAGTAGGACTAAGAGAGCACCAATTCAAAATACCTCTGAGCCAAAACGATCAGGTCCAGAGGACCACAGAGAGAGCCAGTCTTCTAGGCATTCTGAAGTGCGTCCCAGTAAAGACAAAGAGCACAGGACTCCACATATAACTTTGACTCCTGAGCCAAGGACTGATGCGGAGAAAAGTGCTCCACATGTAGACCATATCAAAATACCGTCTGCGCGCTTGACAAGACTCTCCTCAGATTTAGCACGGGAAACCGATGAGGCTGCGTTTGTCCCTGACTACAGTGAAAGTGACAGTGAGGCCTCGGACATTGAGAGCAAAACAGAGCAGAAAGGAAGAGAGCGGGACAGCAGTGGCAGCCATAGCCCGAGCCCGTCTGGAAGCCACGGACACAGCAGCAGCCCCAGCTCTCCAGGCAGCCAGGACAGCAAAAAGAAGAAAAGGGACAAAAAGGAGAAAAAGGAAAAGAAGAAacacaaaaagcacaaaaaacacaaaaagcatAAGAAACATACAAGTAATGAATCTGAATCAGAACTCAAGggacaaaaacacaaacataaaaaaaagaagtcGAAAAAGAGCAAGGACAAAGACAAAGATGACAAGGAAAAAGATGAAAATGGGAGAGATGAGCATAAGACAAAACTAACTGTTTAATTCATAGGTTTAACCGTTAATTTCACTTGATCAtcttaaaaaaactgcttaagtACTGTTCAACTTTCATGAGAATTTGTTAACatgttattttgttgttgttgaccaAGCTAGCCTCTCCCGTCAATGGAAGAGAGTTCCTACTTGAGTGACAGGTTATTTTATTTTGGGTTCTGAATTTTCATGAATATTTTGGTTCTCATTTAAAATTGTTGCAGATTCTTTTTACATCATGGTTTTGCATTAAGGCTTTTGTAGAGGAAGCACTTTAGAAATGTGAATGTGATTGCAGATTTGCAAAATTTGCAGAGTTGCAAAAGCCCTTTTGTACCTCATCTCTTGTACAATTTGAGTTGGAGAGAAACATATCATTGACAGTATGAAAATATTGTTACCAAGGTAACGAGAGAGGGGTGTCCAAACGTTTTGGAACGCTGATTTACATATTGTGTTTTTGCACTGTGAATATTTCCTCTACTCTTTCATTTTATTCTTCACCCTCACAAGAGTAATTTAAATTATCTGCTGAAATGGAATTGCATATGTTTTGAGGACAATAAATTTTTCAGCAAATATAAATTCTCATGTTGTTTTTCATGCCTTAATAAAGACTGTTTCAAATTGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040930-5 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBBP6 (RB binding protein 6, ubiquitin ligase).

Ensembl:

ensembl_id ENSDART00000150918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052352 lncRNA upstream 673289 34732869 ~ 34733118 (+) True XLOC_025538
TCONS_00052736 lncRNA upstream 1152461 34253557 ~ 34253946 (+) True XLOC_025534
TCONS_00052735 lncRNA upstream 1156164 34249182 ~ 34250243 (+) True XLOC_025533
TCONS_00052733 lncRNA upstream 1189183 34210893 ~ 34217224 (+) False XLOC_025530
TCONS_00052353 lncRNA downstream 18716 35439910 ~ 35489947 (+) True XLOC_025547
TCONS_00050344 lncRNA downstream 74497 35495691 ~ 35511996 (+) False XLOC_025548
TCONS_00050345 lncRNA downstream 74499 35495693 ~ 35498301 (+) False XLOC_025548
TCONS_00052354 lncRNA downstream 109883 35531077 ~ 35531511 (+) True XLOC_025548
TCONS_00052737 lncRNA downstream 146308 35567502 ~ 35570748 (+) True XLOC_025550
TCONS_00050339 mRNA upstream 30429 35298078 ~ 35375978 (+) True XLOC_025545
TCONS_00050337 mRNA upstream 140347 35005062 ~ 35266060 (+) False XLOC_025544
TCONS_00050338 mRNA upstream 155882 35005730 ~ 35250525 (+) True XLOC_025544
TCONS_00050336 mRNA upstream 411345 34988670 ~ 34995062 (+) True XLOC_025543
TCONS_00050335 mRNA upstream 412119 34986837 ~ 34994288 (+) False XLOC_025543
TCONS_00050343 mRNA downstream 74376 35495570 ~ 35533366 (+) False XLOC_025548
TCONS_00050346 mRNA downstream 76925 35498119 ~ 35529187 (+) False XLOC_025548
TCONS_00050348 mRNA downstream 88846 35510040 ~ 35533166 (+) False XLOC_025548
TCONS_00050347 mRNA downstream 88846 35510040 ~ 35533166 (+) False XLOC_025548
TCONS_00050349 mRNA downstream 120873 35542067 ~ 35549478 (+) False XLOC_025549
TCONS_00050332 other upstream 496008 34910280 ~ 34910399 (+) True XLOC_025541
TCONS_00050326 other upstream 1047075 34359215 ~ 34359332 (+) True XLOC_025535
TCONS_00050323 other upstream 1208636 34197694 ~ 34197771 (+) True XLOC_025529
TCONS_00050321 other upstream 1235375 34161217 ~ 34171032 (+) True XLOC_025526
TCONS_00050319 other upstream 1247335 34158875 ~ 34159072 (+) True XLOC_025527
TCONS_00050355 other downstream 321990 35743184 ~ 35743256 (+) True XLOC_025552
TCONS_00050357 other downstream 390862 35812056 ~ 35818407 (+) False XLOC_025554
TCONS_00050359 other downstream 390883 35812077 ~ 35831362 (+) True XLOC_025554
TCONS_00050360 other downstream 538718 35959912 ~ 35960010 (+) True XLOC_025556
TCONS_00050361 other downstream 539795 35960989 ~ 35961086 (+) True XLOC_025557

Expression Profile

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