RNA id: TCONS_00050404


Basic Information

Item Value
RNA id TCONS_00050404
length 4067
RNA type mRNA
GC content 0.48
exon number 27
gene id XLOC_025578
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37196258 ~ 37235300 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAAGTCCAGTTTACCAGCACTTAGAGTATTAGCCCAGAATCAGTTGTCAAACAGTCATTTCAGTTAAGGGTTGATACTATGCCAGTCAGTCATAAAAGGCAGTAAGTTTATCTTGCCTACTGTTTGTGTTCTTGTGCTCCGGACTCGTCCGAAAGATAGCCTTCCAGTTTTGCAAATGCCACAGCACAGATTCTTGACTCCAGTCGAGTGTGAGAACTAACTAATAACATCAGGATTTTTGTTAACTTCAGAGGGAGAGTCAGGCACATTAAAGAAACTTCTGTAGGCCTGATCTAATGGCTGGACGTTCAAAAAGCTGAGAAAGATGCTTCAACTTCTGAAGGAGAGGCAGACAACTGGAGAAAAGGCCTGTTAAATTTATAACTAACATGCAGCCGCACTGAAAGCCTGGACGAGATAAACTTTTACaggacttctttttttttaatagagagaAAGCATAAAGaagcaatttttaaattaattttggagTAAATGTGTGTCTACGATTGATCTTCCATTTTGAAATCGTTGCATCTGAAAATACTTTTAGGAATCTGATTGTTGTGAATTCTCCTCTTCATCAAGAGCTTCTTTGCAATCACATGCACCGTCTCATCCTAAACCCTGCATGTGTTTAAAAGGTGTCCATATTGACTGACAGCATGTCCTAAAGAAGCCCATGTGCTTTCACTCACGCTGGATTGGACAGACTTTAAAAATTGAGCAAAGAGTTTGGCTTTCGGGAATCATCAGCAGTTTGTCTCAAAGCAGTCTAATATCCTGGAATTCCTAAGGAAAGCAGTGATGGGTAACGCAGCCGGCGGGTTGGAGCAGGCGGAGGGGCAGGAGGCCAAAGGCTCAACGGGAGGCCTAAACCCTGCTCCCTCCATCCTTAAAAAGAAATGTGCCCCTCCAAAGCTACCCATGCCCCCAGAGGAAGAGCTAGAAGAACGCTTCAATGTGGTTTTGAGCACCATGAATCTCCCTCCTGATAAGATGAAGCTTCTGAGCCAGTATGACAATGAGAAGAAATGGGAGCTGGTCTGTGATCAGGAGCGATTTCAGGTGAAAAACCCTCCTTCAGCTTACCTCACTAAAATCAAGAGCTTCTACCAGGACCAGGGTGGAGTCACACGCAGGTTCAAGAAACGTGTGCAGGAGTCAACTCaagtcctgagagagctggaaaTATCGCTGAGAACCAATCACATTGGGTGGGCCCAGGAGTTTCTGAATGAGGAAAACCAAGGCTTGGATGTCCTGGTGGACTACTTGTCATATTCTCAAAGTGACGTGCCGTTTGAGGTGGAGTCTGTGGAAAATGGTGGCTCCATATCAGACAACAGGAGGATGTCAGAGAGATCGGTGGAGGATCTTGCCAAAAATGTCAACCATTCTGCCCCACACACGATGACCAGGGCAGCGCGTGCGCTCACTGTCCGAATAACGTCACTGGCACACAGCAGAAAAACTCTGCGAATTGCCCGACTGGCCACCCAGAGAGATGATGTTCACCTCTGCATTATGTGTCTACGTGCTATTATGAACTATCAGTCTGGGTTTAATTTAGTCATGACACACCCTAGATGTGTCAACGAAATCACACTTAGTCTCAACAACAAAAACCCCAGGACTAAAGCTCTCGTCTTGGAGCTGTTGGCAGCAGTGTGTTTGGTTAGAGGAGGCCATGACATCATCATATCAGCTTTTGACAACTTTAAAGATGCTAGTGGAGAGAAGAACCGCTTTGAGAAGCTCATGGAGTACTTCATGCATGACGACAGCAACGTGGACTTCATGGTGGCTTGCATGCAGTTCATAAACATTGTGGTTCACTCAGTGGAGAACATGAACTTCCGTGTACATCTCCAATATCAGTTCTCTCAACTAGGACTTGACCAGTACTTAGAGTCGCTTAAGGATATGGAAAGCGAGAAGCTGCAAGTGCAGATCCAGGCCTATTTGGATAACGTGTTTGATGTTGGAGCTCTGCTAGAGGATGCAGAGAATAAAGGAGATATAGTGGACCTTGTAGCAGATCTGCAGGAGAACAATGCACAGCTGACCGCCAGACTGCAGGAATGTGAGAATGGAGCACTGGACAAAATAGCAGAACTAGAGCAACAGCTATTGCAGGCAACTAAAGAATCAGCATTGCTGAAGGAGAGCTTGCGGGAGTCCTGCACTCAGGTGAGCACGCTACAGCAGAGAGAACGAGAGCGAGAGATCCAGAGAGAAAGAGAACGAGAGCAGGAGCGTCAGTCACAGCCCTCACAGGTGGACAGAGAGAAGGGGAGTGAAAAAGAGTCCAAACTGGAGAAAAAACTCAAAGAACTGCAGGAGAAAGGCTTACTTCGACTGGAGCGCACAGTCTCTGGAAGCCTGGACATTGACGTCATTCCAGTCACCTTAGAGAAGATTGTAACTCAGACAGTGACTGTGCCCGATTCTGCTTCTCAAGCCCCACCCAGTCCGGCTGCAGCACCACCTCCACCTCCTCCACCCCCTCCACTACCTGGCGCTGAagcacctcctcctcctccaccacctcctcctccttctgGAAGTGGAGGTGCTCCTCCCCCTCCCCCTCCGCCACCTCCCCCTGGTGGAGGTCCACCACCACCCCCGCCTCCACCGGGCTCTGGGCCTCCACCTCCTCCTGGAGCTCCTCCTGCCCCTGGAGCTGAAACAGGACCAAAGGCACGCAAAACAATTCAGACAAAGTTCAGGATGCCTCTGTTGAACTGGCAGGCTTTGAAGCCCAACCAAGTGTCCGGAACGGTGTTTAGTGAGCTGAATGATGAGCAAGTGTTACAGGCTCTGAATATGGATCTATTTGCGGAGCAGTTTAAGACTAAAGCACAAGGTCCCCCAGCAGATCTTTCTAAGCTCAAGGTTAAAGTGGCTGAGAAGGCCCCAACTAAGGTGTCCCTGCTGGAGGCTAACAAGGCCAAAAACCTTGCCATCACCCTCCGCAAGGGAGGCATGAACCCTGACAAAATCTGCACTGCAATTGAGAGTTATGATCAGTCTCTGAGCTTAGACTTTCTGGAACTTCTGGAACGCTTCATCCCATCGGAGTATGAGATGAAGTTGCTCCAGAACTATGAGAAAGAAGGACGTCCTCTAGAAGACCTGAGCGAGGAGGACCGTTTCATCAGCCGCTTTGGGAAAATCCCACGTCTTTCCCAGCGGATTAACACTCTTACCTTCATGGGGAACTTTCCAGAAAGCATCAAACGCCTGCAGCCGCAACTGGATGCCATCATTGCAGCATCGGTGTCCCTCAAGTCCTCATCAAAGCTGAAGAAGATGTTAGAGATCATCCTGGCCTTTGGGAACTACATGAACAGCAGTAAAAGAGGAGCAGCGTATGGCTTCCGTCTGCAGAGCCTCGACCTGCTGCTGGACACAAAGTCCACAGACCGCACACAGACTCTGCTGCACTTCATTGCAAATATGGTGCATGAGAAATACCCTGAGCTTACCTCCTTCCACAATGAACTCCGCTTTGTAGACAAGGCTGCTCTAGTGTCTCTGGACGGTGTTCTGCAGGATGTAAGATCTCTGGAAAGAGGCATGGAAGGCACCAAGAAGGAGTTTATGGTGCAGGACGACATCCCGGCACTCAAAGAGTTTGTCAAAGCCAACAGTGATGTATTAGACTCCCTCGTTAAAGATGGCAAAACAGCACAGGAGGCATATGCGGCTGTGGTGGAGTATTACGGAGAAAACCCCAAGACGACACAGCCTTCCATGTTCTTCCCAATCTTTGCAAGGTTCATCAAAGCTTATAAGCAAGCGGAACAAGACAACGAACAGAAGAAGAAGCAGGAAATGGCAGCAGAAGAACAGGCAACCCCTTCCCCAAAAAAGAAAGAGGGCACCCCTCAAAAGGGTCCCATGATGCCCAAAATGGACCTGATTGCAGAGCTGAAGAAGAGACAAGTGAAGCCCCAAGTTACAGACGGAGCCATTGATGACATTATCACAGATTTGAGAAACTCACCATATAGAAGAGGTGATGGTCGGAGAGCAGCTCCACGACAAGAAAACTGA

Function

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0016043 cellular component organization biological_process
GO:0005829 cytosol cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120215-83 Predicted to enable actin filament binding activity. Predicted to be involved in cell migration; cortical actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within actin cytoskeleton organization and regulation of cell morphogenesis. Predicted to be active in cytosol. Is expressed in several structures, including nervous system; notochord; optic cup; pharynx; and trunk. Orthologous to human FMNL1 (formin like 1).

Ensembl:

ensembl_id ENSDART00000185896

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050397 lncRNA upstream 260123 36895465 ~ 36936135 (+) True XLOC_025574
TCONS_00050396 lncRNA upstream 271980 36895432 ~ 36924278 (+) False XLOC_025574
TCONS_00052743 lncRNA upstream 346422 36835187 ~ 36849836 (+) True XLOC_025572
TCONS_00050392 lncRNA upstream 470613 36723702 ~ 36725645 (+) True XLOC_025571
TCONS_00050380 lncRNA upstream 770425 36424002 ~ 36425833 (+) True XLOC_025566
TCONS_00052744 lncRNA downstream 243137 37475789 ~ 37477433 (+) True XLOC_025579
TCONS_00052356 lncRNA downstream 362689 37595341 ~ 37596530 (+) True XLOC_025581
TCONS_00052357 lncRNA downstream 364077 37596729 ~ 37597391 (+) False XLOC_025582
TCONS_00052358 lncRNA downstream 364077 37596729 ~ 37627885 (+) True XLOC_025582
TCONS_00052359 lncRNA downstream 366615 37599267 ~ 37616357 (+) True XLOC_025583
TCONS_00050401 mRNA upstream 60689 37112693 ~ 37135569 (+) False XLOC_025577
TCONS_00050403 mRNA upstream 60847 37112745 ~ 37135411 (+) True XLOC_025577
TCONS_00050402 mRNA upstream 60890 37112745 ~ 37135368 (+) False XLOC_025577
TCONS_00050400 mRNA upstream 88385 37083765 ~ 37107873 (+) True XLOC_025576
TCONS_00050398 mRNA upstream 141207 36972298 ~ 37055051 (+) False XLOC_025575
TCONS_00050407 mRNA downstream 342233 37574885 ~ 37581620 (+) True XLOC_025580
TCONS_00050408 mRNA downstream 416784 37649436 ~ 37660860 (+) True XLOC_025584
TCONS_00050409 mRNA downstream 474780 37707432 ~ 37742595 (+) True XLOC_025585
TCONS_00050410 mRNA downstream 554577 37787229 ~ 37789244 (+) False XLOC_025587
TCONS_00050416 mRNA downstream 557699 37790351 ~ 37806283 (+) True XLOC_025592
TCONS_00050385 other upstream 576456 36617142 ~ 36619802 (+) True XLOC_025568
TCONS_00050361 other upstream 1235172 35960989 ~ 35961086 (+) True XLOC_025557
TCONS_00050360 other upstream 1236248 35959912 ~ 35960010 (+) True XLOC_025556
TCONS_00050359 other upstream 1364896 35812077 ~ 35831362 (+) True XLOC_025554
TCONS_00050357 other upstream 1377851 35812056 ~ 35818407 (+) False XLOC_025554
TCONS_00050411 other downstream 554657 37787309 ~ 37789209 (+) True XLOC_025587
TCONS_00050412 other downstream 555166 37787818 ~ 37787902 (+) True XLOC_025588
TCONS_00050413 other downstream 555551 37788203 ~ 37788289 (+) True XLOC_025589
TCONS_00050414 other downstream 555824 37788476 ~ 37788560 (+) True XLOC_025590
TCONS_00050415 other downstream 556209 37788861 ~ 37788945 (+) True XLOC_025591

Expression Profile

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