RNA id: TU2377938


Basic Information

Item Value
RNA id TU2377938
length 3333
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G2079657
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 37815848 ~ 37819286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATGTTCTACATCTTACAGTACATATTATACAATAACAAACTTGGCTTAGTTATGGTACGAAGATCACTATCTGAtcttcaaaaaataaaaaattaaaaaatgatcaaaaacatttaaaaaaaaagaaatgaaaAACAGATTTACACTTCATATCACAAGCCTGACATGGGTCCGGAACACTGGACCAATAAGCTAACATACAATTCAGTTCACGCAACGTTGAGAAAACGTTGTGCCATGGTTTGCCACAACGGTATGGTAATGTTACCATTGTTTGTGCAAACTGGGTACAAAACTTCAAGGGGGTTGTTCCTAAACTCGCTCCAGGGATAAAAGTATTTTGGAAGACGAGGAATTTCCACTTTTTGCATCACATTTAGTGTTCAAATTATTATTTTAGAAATCTCCAACAAGTGAAATAAAAAGCTGCAGAACATTGAGGAAAAACCACAAAAATAAGTGCACTATTCCTCCAATAGTAGTGTTTTAATTTGAGGAAACTGCTAAGACATGAAAACTGCTAAGACATGAAAACTGCTAAGACATGACCACAGAGGTAAAAGAAAGAGTAGGAAAAAGAGAGGTGGATGTTTGAGTGAGTATTTAAACATACAAACACCATTTTGATTTGACATAGTTGTGAAGAAATGAAGAGCAAAATACAcaaacacatcaacaacaaattATCTTTTATCTTctttcacattttttaaaaacttatTCAGAGATGGAATGATACAAAAGGTGAAGGACTCATAAGTTGATAGCGTACGAGTAAAAATACCTTCAAATATATCCTCCTTTGAGCTCTGCAGTTAAGTGTTAATCAGGGCTGGGGTCAGTTCCATCTCCACTCAGAATGAGTTGATATTCAGTTCCCTTCCTGAAATGACAACGTTGAAATGGAACTGACACGCACCCTGTTCATGACATCACTCCCATCCAAAACACAGGCATGCAAACAAGTGTGAGCGAGAAAGTCAGAAACAAGCCCCCTCAGAGTGTGTGTGGGACACCGGACCCTCAGACTTGTGCTCTATGTATGAATAATAAACACCAAATTGCAGTTTAACCTTAAATAACACTTATGGTAAAAAAGCGCTCAACTTTACACGGCTCAGGAAGTCCAACATATTCTGTTTCCTATTTTAGGCTGAGGTGTAGAATACTGGAGGGAACTCCTTTCCCTGTTCCAAAATGATCCCCTTTGTAGTTGCTCTTAAAGCATCAGATGGGTTTAAGCACCTACAGTAGCCTTCTAGAAGGTTCAGCAGAGTTGAACAACCATCTCGCTTCAACACATCCAAACGTCTCAGATCAACATGACGTGAGGAGGTAGAGGGTGATGTCAGACTGGGCACCAGACTCTGGTTGGTTAGTGACCCCACATCCAGAGCCCAACCTCAGATAGGATTAGATTGTATTACATGAGACAGTCCTGCTTACTGTCATCTACATGGTTCCAGTCTGCCATTACACTTCACTTCTCATGACCTGTGTCATCAATTTATCTCTGCTATGAAGAGGTACCAACGCTTaaaggggatgagagagggaaagaagaagGGGGAGGGATGGTGTGAAGAAACagctggaacacagagacacagagagagagaagagacagctggaacacagagacacagagagagagaagaaacagctggaacacagagacacagagagagagaggagacagctggaacacagagacacagagagagagagaggggggacagctggaacacagagagagagagagaagagacagctggaacacagagacacagagagagagaagagacagctggaacacagagacacagagagagagaagagacagctggaacatagagacacacagagagagaagagacagctggaacacagagacacagagagagagaggagacagctggaacacagagacacagagagagagagatggaacacagccacacagagagagagagagagagagagagagctgtaacacagagccacagagagagagagagagagagagagagagagagggagagaaagctggaacacagagccacagagagagagagagagagagagagagctggaacaCAGAgcaacagggggagagagagagaggagaaagagagctggaacacagagcaacagagagagagagagagagagagatggaacacagagctacagagagagcgagagagagagagctggaacacagagccacagagagagtAAAATTGAGGAAGAGAGATATAGAATCAGACCAGTTCCAACCCCGATGGCAGGAAGTGGAGGTCATTTTCAGACAGATTATGTTTGGAATAAACAAGTTACTAAAATACACCACCAGAGTGATAGACAGAAATCAGACATTACTCTCTATTCGCCCTCCTTCCTTCCTACCCTCTGGTTTTAGATTCTAAAGGTGGTGGATATCTTCATGTTAATTCAAGCACAGTAACACACAACTACTCAGTGTATAAATAGACTGCATTGTGATGCATGACGCTCCATGCTACACCATACCTGAATATGAACCATCCCCACGGAAGGAAAAACACGCCATCTTTTTCTTAACCTCAATGTGAAACAATGAAACAGTGGATGATTAAATAAATGCTCAGGAACAATAAGCCATTTTCTTATGTTGATATTTATACTAACTAGTACAAACATTATCAGGACTAAGGAACCCTTACTGAACGCTTGATATCTATTGGTTAGTTTTCTTAAATCTCTGTTTCACTACAAAGCCTAGCTACCTGGTACCTAGTAGAAATTATTGTTGTCAGGCTATTTTTATTGTGCAACGCTTCCTCGTGAGATTACAATAACTCTGATATGTACTGCTGACACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGACACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGACACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTGACACCTCAGAATACAGTAACAGTGAACTCTGATATGTACTGCTTACACCTCAGAATACAGTAACAGTGATTCAAATGGATTGAGTCTGGATACACATAATCCAGATTTAAGGATTACCAGGAATAATAATTTTTAAATGATTTTAATTCTAAATGACTATAAAATAATTACTGTGCGGTAACCGTATAACGAGGCATTTTATCTTATTATTGCAATTAACGACTTGATCTACTTTGATACACTGTAAATGCTTTGTAATGACCCGTGCCCCACAGATCCTAACTGTGATTCATACTTATCTATTAAAACCCTGAAACATGGTATACACTGTTCCCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2377935 lncRNA upstream 38590 37737520 ~ 37777288 (+) True G2079656
TU2377916 lncRNA upstream 98317 37717080 ~ 37717561 (+) True G2079643
TU2377892 lncRNA upstream 144534 37670827 ~ 37671344 (+) True G2079621
TU2377888 lncRNA upstream 149695 37665813 ~ 37666183 (+) True G2079617
TU2377878 lncRNA upstream 155335 37659587 ~ 37660543 (+) True G2079610
TU2377998 lncRNA downstream 229 37819515 ~ 37821786 (+) False G2079660
TU2377979 lncRNA downstream 697 37819983 ~ 37821786 (+) False G2079660
TU2377981 lncRNA downstream 697 37819983 ~ 37881958 (+) False G2079660
TU2377997 lncRNA downstream 697 37819983 ~ 37821786 (+) False G2079660
TU2378006 lncRNA downstream 697 37819983 ~ 37893792 (+) False G2079660
XM_036965780.1 mRNA upstream 247005 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA upstream 247005 37552714 ~ 37568873 (+) True LOC110508012
trnat-agu-152 mRNA upstream 310076 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 310244 37505561 ~ 37505634 (+) True trnat-agu-151
XM_036965198.1 mRNA upstream 458272 37318716 ~ 37357606 (+) True mre11a
XM_021588455.2 mRNA downstream 233347 38052633 ~ 38060113 (+) True LOC110508017
LOC110507217 mRNA downstream 650632 38469918 ~ 38474599 (+) True LOC110507217
XM_021588440.2 mRNA downstream 800264 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 1220287 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 1848703 39667989 ~ 39681560 (+) False LOC110508028
TU2377712 other upstream 447742 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 535046 37279105 ~ 37280832 (+) True G2079197
TU2377138 other upstream 539021 37273486 ~ 37276857 (+) True LOC110536894
TU2376553 other upstream 1376524 36438375 ~ 36439354 (+) True LOC110508005
TU2376427 other upstream 1513836 36300938 ~ 36302042 (+) True G2078493
TU2378436 other downstream 125646 37944932 ~ 37945151 (+) True G2080014
TU2380510 other downstream 2008372 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 2076381 39895667 ~ 39913078 (+) False LOC110507223
TU2380578 other downstream 2112588 39931874 ~ 39933835 (+) True G2081949
TU2380828 other downstream 2137929 39957215 ~ 39957751 (+) True G2082162

Expression Profile