RNA id: TCONS_00066234


Basic Information

Item Value
RNA id TCONS_00066234
length 2215
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_033852
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 33151731 ~ 33155212 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtaGTTTGGGTCTGCCTCCATGTCTGCAGCCTCCCCTTCCTCTCCTCAGAGCGCCACCCCAAACTAGCGAAAGCTGTTGGAGAAACTCAATACAAAAACAACCTCATCCCTAAATCCTCCTTGATATCTGCAACTCGAGTACAGCATGTTTTTAGGGTGCATTTTCTGCCTCTCTCTGAATTTGTTCTTTGCGATTGCACAAACACATCAACAGGAATCATCATCTAGTAATACCGATGGCATAAACCCTGAGATGTCAAAACTTCTGGACAGAATGAAATACATTGCTCAAAGCTGCAAAGACATCCGTGACAAGTACCATGTTACTGAGGATGGCCTGTACTATCTGATCTCTTCAAGAGGAGTCCTTTACCAGACGTTCTGTGACATGACCACTGCAGGCGGCGGCTGGACGCTGGTGGCCAGTGTTCACGAAAACAACATGTATGGAAAGTGTACAGTTGGTGATCGCTGGTCTAGTGAACAGGGCAGCAATGAAAACCGGCCTGAAGGTGAAGGCACATGGGCAAACAAAGTCACATTTGGAGCCGCAGAGGCCGCTACAAGTGATGATTACAAGAATCCGGGATACTATGACATTGCAGCTCAGGATGTTTCTGTGTGGCATGTGCCTAATAATATGGAGTTGGAACACTGGAGCCAAGGGTCCATCCTCAGATACCACACTGAAAATCACTTCCTGACCCTACACGGAGGAAACCTATTCAAGTTATTTATGAAATTCCCTGTGAGGTTTGGAATCGGCTCCTGCAACATTGATAATGGACCTGCTGTCCCGATCGTGTATGATAGTGGAAATGTGGAATCAACCAAAAAACTCTATGGTCCTAATTCGAGAGCAATATCTGAGCCTGGATTCATCACATTCAGAGTCCTCAATACTGAGAAGGCAGCCATGGCTCTTTGTTCTGGTGTTAAACCGACTGGTTGTCACACCGAACATTTCTGTATTGGTGGAGGTGGACACTTTCCTGAATCTCCTAGACAATGTGGAGATTTTACAAGTTTTGACTGGAGTGGCTATGGCACTAATGCAGATTGGAGTGCTTCCAGAGAGATAACTGAAGCAGCGGTGCTTCTCTTTTATCGCTGACAGATCAAACCTTTCTTTCCTTTGTTGTAATCACAGTTTACCATTTAACAGGTGGAGAGTTTTTTAattgcaaaagccgctaaacaccATTTCGGCCaaaaaatgagctaatgacattgaatgaatgctttaggcatgtaGTACATGTTCAAGTAGTACAGTTTTGTTTGAAATCATCTAAATCCCCGGTGAACGCCACTTGCCTTGAGAGACGTACCGCACAACCAATCCCACCAACCCCCTCTCCCTCCGCTCTTCACTTACCGATCGTCCCACACCCCACCGACACCCCATACCCAAACTATAGCTATATTAAACAGCAACTCCATTTCACGAGAGACGAagttaagatgccgttcttttatCCTGCATGGATGCTATGAAGATAATTAAGAGACGAAAAAGAAATCTTGCATATAATtaggatgaataaatgacagcTCCTGAGGGACATCCTCTTTTTTGCACACTAGGCCAACATTGTGTTTCTTTTTCAAAAGCAAGCTATatgttttaaaagataaatataatgtataaaactatacaatatttatattacttcaataaattatttttttagtaatggacaatgcacagatattgacaatgtttcacaatatttttacactacattatttgaatctaacaagcgtagtttacaatgtttgcaatgtgTACATTGcactacttacattaaatctaaatcttgaatatcagaaatgacaacagattgttaagatttaattcatgtcaattttaatgttattgactaatgtgcacaagttttcattcattcattttccatcagctttttccctggtttatcagtggttaccacagcggaatgaaccgccacttacttgacagatttatttttaatttcaggtggtttgtgttttatgtttggtaaaataatctcTAATAGCATCTTTAGTGGTTTTTAATCTAATTATAATGTCTTGTCctaataggtggatttagagggttttgcaaaaaagcaaaaagtggatttagctggttctgaagcaaaagaaaatttactttgttaaaaaccaaagaattgtctaaagtgacatttttggaaataaaaaagttatttt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-160728-3 Predicted to enable oligosaccharide binding activity. Predicted to be active in extracellular space. Orthologous to human ITLN2 (intelectin 2).

Ensembl:

ensembl_id ENSDART00000029106

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066231 lncRNA upstream 9456 33136533 ~ 33142275 (+) False XLOC_033850
TCONS_00066202 lncRNA upstream 660581 32475343 ~ 32491150 (+) True XLOC_033841
TCONS_00068869 lncRNA upstream 678793 32462643 ~ 32472938 (+) True XLOC_033840
TCONS_00068579 lncRNA upstream 979973 32170199 ~ 32171758 (+) True XLOC_033838
TCONS_00066199 lncRNA upstream 1034778 32022086 ~ 32116953 (+) True XLOC_033837
TCONS_00066236 lncRNA downstream 13707 33168919 ~ 33171622 (+) True XLOC_033853
TCONS_00068870 lncRNA downstream 195970 33351182 ~ 33352586 (+) True XLOC_033856
TCONS_00068871 lncRNA downstream 794072 33949284 ~ 33955326 (+) True XLOC_033860
TCONS_00068873 lncRNA downstream 947094 34102306 ~ 34106210 (+) False XLOC_033862
TCONS_00068872 lncRNA downstream 947094 34102306 ~ 34106210 (+) True XLOC_033862
TCONS_00066233 mRNA upstream 3424 33145529 ~ 33148307 (+) True XLOC_033851
TCONS_00066232 mRNA upstream 8722 33136545 ~ 33143009 (+) True XLOC_033850
TCONS_00066230 mRNA upstream 8956 33133547 ~ 33142775 (+) False XLOC_033850
TCONS_00066228 mRNA upstream 9524 33130661 ~ 33142207 (+) False XLOC_033850
TCONS_00066229 mRNA upstream 17876 33132074 ~ 33133855 (+) False XLOC_033850
TCONS_00066237 mRNA downstream 16854 33172066 ~ 33176106 (+) True XLOC_033854
TCONS_00066238 mRNA downstream 123896 33279108 ~ 33340494 (+) False XLOC_033855
TCONS_00066239 mRNA downstream 124406 33279618 ~ 33318191 (+) False XLOC_033855
TCONS_00066240 mRNA downstream 159713 33314925 ~ 33341921 (+) True XLOC_033855
TCONS_00066241 mRNA downstream 217468 33372680 ~ 33441201 (+) False XLOC_033857
TCONS_00066207 other upstream 469976 32681640 ~ 32681755 (+) True XLOC_033844
TCONS_00066189 other upstream 1720520 31427169 ~ 31431211 (+) True XLOC_033834
TCONS_00066148 other upstream 2675349 30475836 ~ 30476382 (+) True XLOC_033822
TCONS_00066147 other upstream 2712710 30438905 ~ 30439021 (+) True XLOC_033821
TCONS_00066122 other upstream 3220092 29931525 ~ 29931639 (+) True XLOC_033808
TCONS_00066246 other downstream 697976 33853188 ~ 33853307 (+) True XLOC_033859
TCONS_00066247 other downstream 924972 34080184 ~ 34080298 (+) True XLOC_033861
TCONS_00066258 other downstream 1150383 34305595 ~ 34311229 (+) False XLOC_033868
TCONS_00066266 other downstream 1351583 34506795 ~ 34526500 (+) False XLOC_033873
TCONS_00066285 other downstream 1651715 34806927 ~ 34811489 (+) True XLOC_033879

Expression Profile

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