RNA id: TCONS_00066240


Basic Information

Item Value
RNA id TCONS_00066240
length 3391
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_033855
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 33279108 ~ 33341921 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGTCTTTCAGTTTAGATCAATATGTTTTATAAACCTAATAAGGTCGATTTGAGGTCAGTCACTGACAGCAATGATTGGAAAGACATTAATAAGCAAACAATCACATAAAGAGAAGACAGAGAAACAATTTGTGCCGGTGGTGAGACAAGCATTATGTTAGAAAAGGACTCTCTCttatgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaggcagAGAGAAGGATATTCGACCTCTAGCAATTACAGTAGCACAAAGTAGCTGATGTGGGGCTGGGCCTGGTAAGAGGGAGGGAATGAAGTAGTGAGGGAGGGATGAAATGAGGCTGTGGGAGGAGAAGGCTTGGAGGAAAAGAGGAAAGAGCAAAACAGATGCAACTAACTCAGGGTGGCAAACTAGATGCACACAGGACGCTGGAGAAGATACTGACTCTTTCTGTATATATGACTGCAAAATTCAGAGGGTGGTGAGCTCAAAACCAGAGGAAAGATGTCATGGCGGCCGACCTACCGGAGCTCCAAGTTTCGAAACGTCTATGGCAAAGTGGCCAACCGAGAGCACTGCTTCGAGGGCATCCCGATCACAAAGAACGTCCATGACAACCACTTCTGTGCGGTCAACGCCAAGTTCCTCGCCATAGTGACGGAAAGCGCGGGAGGAGGATCTTTCGTTGTAATCCCGGTCACTCAGTTTGGCCGTATCGACCCTCACTATCCAAAGGTATGTGGTCACCAAGGAAATGTGCTGGACATCAAATGGAATCCTTTCCACGACAACATAATCGCATCTTGTTCAGAGGACTCATCTGTGCGAATATGGGAGATTCCTGACGGTGGACTGAGAAGGAGTTTGACAGAGTCTGTATTAGAACTCTATGGCCACAGCAGGCGTGTGGGCCTCATCGAGTGGCATCCAACAACTAGCGGGATTCTCTTTAGTGCTGGCTATGACTACAAGATCCTGATTTGGAATCTTGAGATCGGAGAGCCAGTGAAAATGATCGACTGCCACTCAGATGTGATTCTGTGTATGTCATTTAACACAGAGGGCAGCTTGCTGGCCACCAGCTGCAAAGACAAGAAACTTCGTGTCATTGAGCCACGCTCAGGCAGAGTTCTGCAGGAGGCCAACTTTAAAAACCACAAAGTGAATCGTGTTGTGTTCCTAGGCAACATAAAACGACTCCTAACGACAGGTGTGTCTCGCTGGAACACACGCCAGATTGCTCTCTGGGACCAGGAGGATCTGTCCATGCCGATCATTGAAGAGGAGATTGATGGTCTTTCTGGACTACTTTTCCCTTTCTatgatgcagacacacacatgttGTACTTAGCAGGCAAGGGTGATGGGAACATCCGGTACTATGAGGTCACACTGGACAAACCCTACCTGCAGTACCTCATGGAGTTCAGGTCCCCTGCACCACAAAAAGGCCTTGGAGTGATGCCGAAGCATGGACTGGATGTAGGAGCATGTGAAGTCTTTAGGTTTTATAAGTTGGTGACTCTAAAGGGCCTGATTGAGCCCATCTCTATGATCGTGCCTAGAAGGTCGGAGACGTATCAGGAGGACATTTACCCCATGACTCCTGGGACAGAACCGGCTCTGTCTGCTGATGAGTGGCTCAGTGGCATCAACCGAGGCCCCGTTCTCATGTCCTTAAAAGAGGGCTACAACAGACCCAACAAGCTGGTGTTCAAAGCACCCGTGAAGGAGAAGAAGGGTGGAGTGGTCAATGGCATTGACCTGCTAGAAAACGTGCCTCCCCGTACAGAGAATGAGCTCTTGCGGATGTTCTTCAGACAGCAGGAGGAGTTGCGTCGACTGAAGGACGAACTCACACAGAAGGACATTAAGATTCGACAGCTGGAGCTGGAGCTCAATAACATCAGGAACAGCCcgaacatcaacaacaacaataacaacagcaaTGGTAGCAGCATTTGACACAGAACTGTTGATTTCCTGAAGTGACACACTACAAGCTCCAAACACTGCTGAAACACGGGCTTCCTCTTTCCTAACACTCAAATATCCTTCCTTCAAGACCGCAGGAGAGCCGGCGCTTGTCTTCATAAAGCAGTGTTTCAATCTGACCGCAGTGTTGACCCCACAGCTGCTGTGTGCTAAGTTGACTTTACTGGAGCGATGATTCACTAACCTGGTGAAAAATCTCCTATCACATGACCTTCAGTCACACTACGGGTCAACCTGAAGTGGTTTTGGTACAAGCTATCCATTGCATTTTCATCTCACAATTGTAGACATTACTAGattgaattattagaattatttatttttttcttttttttttgcgctacttctaaacagcttaatgACCCCATATAGAGATAAAAAATGAGTAAGACGTGCTTCCCCCATCCAGCTGTTATCTCTTGTAAACATTAGGTCTATTGCATCATTATGATATGACCCACAGtgctgttttaaagggatagtttaccaagCAATGCTTGTTGCAAATttgtacaaatatttttaattctgCTCCACACAAAAAAAGTAGTATGCTCAgcaggcaccttgatgtcaaaacgacatcaaaaaCACATCAGTAATGTCAgttgactaccttgatgtcaaaacgacatcaaattgGTATCTAAAATAGGTGTCAAAACCAGGCCAAAATCTATTACAGGACTGTCATGCAGTCCATTTTtgatcatgttttgtttttcgGTAGCAgtattagatgtcaatttgatgtagttttgacatcaatttatttaaatccaTAGGAATACACAATTAAGTGTAAATTTGTTGTTTGAAATTGAAGCTTTTAGattaattggattaactaaactTTTAGTGTCATTGTTTTGGTGGTCAAAATGGAATCAATGTGTGAATGTCAAATGtatgtcaaggttttgacatcaaataattaattaattcattcatattcttttcggcttagtccctttatttatcaggggttgccacagcggaatgaaccgccaacttatccagcacatatttaagcagtaaatgcccttccagctgcaacctattacttggaaaacacacatacactctcattcacactcatactctacagacaatttagcttacccaattcttttctttgaacttgtggtggaaacccactcgaacatggggagaacatgcaaacttcacacagaaatgccaactagcgaccttctttctgtgaggcgatcgtgcttcccactgcgccaccatggcGCCCTGACAtcaaataaattagcatttttgatgTTTAATTTTTTACCCCGCCCTCCAATCCTCAGATTTTTTGGGACAGTCTGTTACACCACTGGGTCACCAACTTTAGTATAATATCTGATTGCAGCAGCCGCCCAAATTCC

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0016020 membrane cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050518-1 Predicted to enable actin filament binding activity. Predicted to act upstream of or within actin cytoskeleton organization. Predicted to be located in membrane. Orthologous to human CORO2B (coronin 2B).

Ensembl:

ensembl_id ENSDART00000148590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00066236 lncRNA upstream 143303 33168919 ~ 33171622 (+) True XLOC_033853
TCONS_00066231 lncRNA upstream 172650 33136533 ~ 33142275 (+) False XLOC_033850
TCONS_00066202 lncRNA upstream 823775 32475343 ~ 32491150 (+) True XLOC_033841
TCONS_00068869 lncRNA upstream 841987 32462643 ~ 32472938 (+) True XLOC_033840
TCONS_00068579 lncRNA upstream 1143167 32170199 ~ 32171758 (+) True XLOC_033838
TCONS_00068870 lncRNA downstream 9261 33351182 ~ 33352586 (+) True XLOC_033856
TCONS_00068871 lncRNA downstream 607363 33949284 ~ 33955326 (+) True XLOC_033860
TCONS_00068873 lncRNA downstream 760385 34102306 ~ 34106210 (+) False XLOC_033862
TCONS_00068872 lncRNA downstream 760385 34102306 ~ 34106210 (+) True XLOC_033862
TCONS_00068874 lncRNA downstream 821854 34163775 ~ 34187355 (+) True XLOC_033863
TCONS_00066237 mRNA upstream 138819 33172066 ~ 33176106 (+) True XLOC_033854
TCONS_00066234 mRNA upstream 159713 33151731 ~ 33155212 (+) False XLOC_033852
TCONS_00066235 mRNA upstream 160813 33152723 ~ 33154112 (+) True XLOC_033852
TCONS_00066233 mRNA upstream 166618 33145529 ~ 33148307 (+) True XLOC_033851
TCONS_00066232 mRNA upstream 171916 33136545 ~ 33143009 (+) True XLOC_033850
TCONS_00066241 mRNA downstream 30759 33372680 ~ 33441201 (+) False XLOC_033857
TCONS_00066242 mRNA downstream 30761 33372682 ~ 33444000 (+) False XLOC_033857
TCONS_00066243 mRNA downstream 82123 33424044 ~ 33441245 (+) True XLOC_033857
TCONS_00066244 mRNA downstream 115227 33457148 ~ 33472957 (+) False XLOC_033858
TCONS_00066245 mRNA downstream 115293 33457214 ~ 33475194 (+) True XLOC_033858
TCONS_00066207 other upstream 633170 32681640 ~ 32681755 (+) True XLOC_033844
TCONS_00066189 other upstream 1883714 31427169 ~ 31431211 (+) True XLOC_033834
TCONS_00066148 other upstream 2838543 30475836 ~ 30476382 (+) True XLOC_033822
TCONS_00066147 other upstream 2875904 30438905 ~ 30439021 (+) True XLOC_033821
TCONS_00066122 other upstream 3383286 29931525 ~ 29931639 (+) True XLOC_033808
TCONS_00066246 other downstream 511267 33853188 ~ 33853307 (+) True XLOC_033859
TCONS_00066247 other downstream 738263 34080184 ~ 34080298 (+) True XLOC_033861
TCONS_00066258 other downstream 963674 34305595 ~ 34311229 (+) False XLOC_033868
TCONS_00066266 other downstream 1164874 34506795 ~ 34526500 (+) False XLOC_033873
TCONS_00066285 other downstream 1465006 34806927 ~ 34811489 (+) True XLOC_033879

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_07070470_07091280.mRNA True 1684 mRNA 0.48 12 CI01000026 7070470 ~ 7091509 (+)
bowfin (Amia calva) AMCG00007410 True 3648 mRNA 0.53 11 CM030123.1 18065426 ~ 18077532 (-)