RNA id: TCONS_00066241


Basic Information

Item Value
RNA id TCONS_00066241
length 2006
RNA type mRNA
GC content 0.53
exon number 4
gene id XLOC_033857
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 33372680 ~ 33444000 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGGTTTTGGTTATGATTGGCCAGACAGGTACCGTCAGCGATCTCGTGATCTCGCGATATCTCAGGCATAAGTTGTCTCGGTGCAGCGCTGTAGCGGGCTGAGTGTGGGAGCTCGACTGGCAGCGGAGCCTCCGTCTCGCTCTCGAGCCAACTGCAACCCGAGATCTTCAGGCTGTTTACTTTGCCTTTTAACTTTTGAGGGGCCCGAGGAACCGCGTGCTCGAATGTTTCAATGGTAAGCAGGGATGATGCGTTGTCTGGCAGCCCGTGTTCACTACAAGACCCTGATAGTGATCTGTGCTCTTCTGTCTCTGCTCACGGTTCTTCTTTGGAACAAGTGCACGAGTGAGAAAGCACTGCGCTTCCTGCCCCGGCACCCTCAACCTCCTCCCAGCCCTAAAATAGACAGCCATCCTCAGCAGCCCCAGCCCCCGGAACCTCCACCTGTAGTTGGCGGAGTGCGATATGAAGAGATAGACTGCCTGATCAATGACGATGCCACCATTAAAGGTCGTCGAGAAGGCAGTGAGGTTTACATGCCTTTCAGCTGGATGGAGAAGTACTTTGAGGTGTACGGCAAGGTGGTGCAGTATGATGGTTATGATCGTTTTGAGTTTTCACACAGTTACTCCAAAGTATACGCTCAGAGAGAGCAGTACCACCCCAATGGAGTCTTCATGTCCTTTGAGGGGTATAACGTGGAGGTGCGTGACAGAGTCAAGTGCATCAGTGGAGTGGAAGGAGTACCGTTGTCCACCCAGTGGGGCCCTCAAGGGTATTTCTATGCTATCCAGATAGCTCAGTATGGCCTGAGTCATTACAGTAAGAACCTGACAGAGCGGCCACCTCATGTGGAGGTGTATGACACGGCGGAGGAGAGAGACAGCAGGTCCAGCGCATGGACTGTCCCTAAGGGCTGCTCACTCACCAGAGTATATGACAAGACCAGAGCCACATCTGTACGGCAGTTCAGTGCTCCAGAAAACTCAGAGGGTGTCTCACTTCCTCTTGGCAACACTAAAGATTTCATCATCTCCTTTGACCTGAAGTTTACATCTAATGGTAGCGTCTCTGTAATCTTGGAGACCACAGAGAAAGGGCCGCCATTTGTTATCCATTACGTCACCACCACCCAGCTCATTTTGCTTAAGGATCGTGACATCACCTATGGTATCGGCCCTCGGACCACATGGACCACCGTCACCCGTGACCTTCTCACTGACCTACGCAAAGGCATTGGCCTCTCCAACACCAAAGCGGTCAAAGCCACCAAAACCATGCCAAGGCGTGTTGTAAAGTTAGTGGTGCACGGCACCGGGACAATAGACAATATCACAATCTCCACCACGTCACATATGGCGGCTTTTTATGCCGCAAGTGACTGGTTGGTGCGCAACCAGGACGAGCGTGGTGGCTGGCCGATCATGGTCACTCGTAAACTCGGGGAGGGTTTCCGTGCACTGGAGCCAGGTTGGTATTCGGCCATGGCACAAGGACAAGCCATGTCCACTTTAGTGCGTGCCTATCTAATGACAAAAGATGACACGTACCTAAAGGCTGCCCTGCGAGCCACCGGACCTTTTAAACTGCCCTCAGAACAGCACGGTGTCAAAGCAGTGTTCATGAACAAGTATGACTGGTATGAGGAGTAccccacaatccccagctcctTCGTTCTGAATGGATTCATCTATTCCCTCATAGGTCTGTTTGACCTGGCGCAAACTGCGGGTGAGAAACTCGGGCGGGATGCGGGACAGCTGTACAGCAAGGGAATGGAGTCCTTGAAAGTTATGCTTCCCCTTTATGACACAGGGTCAGGCACTATCTATGACCTGCGCCACTTTATTTTGGGCACGGCGCCCAATCTGGCCCGTTGGGACTACCACACAACGCACATCAACCAGCTCCAGCTGCTGGGTACTATTGACAACTCGCCCATCTTCAGGGACTCCGTCAAGCGCTGGAAAAGCTACCTGAAAGGAGGGAGGGCTAAGCACAATTAA

Function

GO:

id name namespace
GO:0030210 heparin biosynthetic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0047464 heparosan-N-sulfate-glucuronate 5-epimerase activity molecular_function
GO:0016853 isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040630-8 Enables heparosan-N-sulfate-glucuronate 5-epimerase activity and identical protein binding activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in immature eye; nervous system; and somite. Orthologous to human GLCE (glucuronic acid epimerase).

Ensembl:

ensembl_id ENSDART00000193436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068870 lncRNA upstream 20094 33351182 ~ 33352586 (+) True XLOC_033856
TCONS_00066236 lncRNA upstream 201058 33168919 ~ 33171622 (+) True XLOC_033853
TCONS_00066231 lncRNA upstream 230405 33136533 ~ 33142275 (+) False XLOC_033850
TCONS_00066202 lncRNA upstream 881530 32475343 ~ 32491150 (+) True XLOC_033841
TCONS_00068869 lncRNA upstream 899742 32462643 ~ 32472938 (+) True XLOC_033840
TCONS_00068871 lncRNA downstream 508083 33949284 ~ 33955326 (+) True XLOC_033860
TCONS_00068873 lncRNA downstream 661105 34102306 ~ 34106210 (+) False XLOC_033862
TCONS_00068872 lncRNA downstream 661105 34102306 ~ 34106210 (+) True XLOC_033862
TCONS_00068874 lncRNA downstream 722574 34163775 ~ 34187355 (+) True XLOC_033863
TCONS_00068875 lncRNA downstream 843366 34284567 ~ 34288459 (+) True XLOC_033866
TCONS_00066240 mRNA upstream 30759 33314925 ~ 33341921 (+) True XLOC_033855
TCONS_00066238 mRNA upstream 32186 33279108 ~ 33340494 (+) False XLOC_033855
TCONS_00066239 mRNA upstream 54489 33279618 ~ 33318191 (+) False XLOC_033855
TCONS_00066237 mRNA upstream 196574 33172066 ~ 33176106 (+) True XLOC_033854
TCONS_00066234 mRNA upstream 217468 33151731 ~ 33155212 (+) False XLOC_033852
TCONS_00066244 mRNA downstream 15947 33457148 ~ 33472957 (+) False XLOC_033858
TCONS_00066245 mRNA downstream 16013 33457214 ~ 33475194 (+) True XLOC_033858
TCONS_00066248 mRNA downstream 785874 34227075 ~ 34236091 (+) False XLOC_033864
TCONS_00066249 mRNA downstream 785928 34227129 ~ 34230996 (+) False XLOC_033864
TCONS_00066250 mRNA downstream 790581 34231782 ~ 34236086 (+) True XLOC_033864
TCONS_00066207 other upstream 690925 32681640 ~ 32681755 (+) True XLOC_033844
TCONS_00066189 other upstream 1941469 31427169 ~ 31431211 (+) True XLOC_033834
TCONS_00066148 other upstream 2896298 30475836 ~ 30476382 (+) True XLOC_033822
TCONS_00066147 other upstream 2933659 30438905 ~ 30439021 (+) True XLOC_033821
TCONS_00066122 other upstream 3441041 29931525 ~ 29931639 (+) True XLOC_033808
TCONS_00066246 other downstream 411987 33853188 ~ 33853307 (+) True XLOC_033859
TCONS_00066247 other downstream 638983 34080184 ~ 34080298 (+) True XLOC_033861
TCONS_00066258 other downstream 864394 34305595 ~ 34311229 (+) False XLOC_033868
TCONS_00066266 other downstream 1065594 34506795 ~ 34526500 (+) False XLOC_033873
TCONS_00066285 other downstream 1365726 34806927 ~ 34811489 (+) True XLOC_033879

Expression Profile

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