RNA id: TCONS_00006616


Basic Information

Item Value
RNA id TCONS_00006616
length 959
lncRNA type retained_intron
GC content 0.42
exon number 7
gene id XLOC_003375
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17137848 ~ 17141887 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCATATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTATAGAGGGCAAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGGCCTTGCTCCAGTGACTGTGAAATGGAGTGAGGCATACAAGGATATGTGTGGTTTTACTCTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTTGCTGACCTATTGATATCAGAAGACCACAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACCGGAAACCAGTTAGAAGACTTTGGTCTGTGACGTAGAGGAGTGGGCAGACGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtaagtgttactattattgtcatttttttcagtagcagaagcAAAGACGACAAACAACAGAAGTGATATGGATGTCTTCGTCATATGGCATGactcTGCTGACCCAGCAACAAAGAGGAGGGTGTTCAACATCATCCTGCTAGTCAGGATTCTTCAGAAGCAGTGGATTCTTGTGGCAGAGATGGCCAACCACTATAAATACATTTCAACTCATCCTGGTTCCTTCAAAGAACTTTCCTGCTTGTTTGCTACTGAAaagtatattcgacatgtggcctaaacgaagaggggttaaaaggtctatggatcatcattctcagaaagcaacaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0043049 otic placode formation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0072175 epithelial tube formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0060788 ectodermal placode formation biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000139344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006597 lncRNA upstream 1092910 16040587 ~ 16045625 (+) False XLOC_003367
TCONS_00006595 lncRNA upstream 1162687 15972519 ~ 15975848 (+) True XLOC_003366
TCONS_00006585 lncRNA upstream 1337139 15799383 ~ 15801396 (+) True XLOC_003363
TCONS_00006584 lncRNA upstream 1359284 15776072 ~ 15779251 (+) True XLOC_003362
TCONS_00006583 lncRNA upstream 1361315 15776072 ~ 15777220 (+) False XLOC_003362
TCONS_00006628 lncRNA downstream 777490 17919143 ~ 17920013 (+) True XLOC_003378
TCONS_00008398 lncRNA downstream 788620 17930273 ~ 17932158 (+) False XLOC_003379
TCONS_00008397 lncRNA downstream 788620 17930273 ~ 17932158 (+) True XLOC_003379
TCONS_00008581 lncRNA downstream 809910 17951563 ~ 17952558 (+) True XLOC_003380
TCONS_00008582 lncRNA downstream 815188 17956841 ~ 17963453 (+) False XLOC_003381
TCONS_00006610 mRNA upstream 550491 16574625 ~ 16588044 (+) True XLOC_003373
TCONS_00006608 mRNA upstream 813960 16216909 ~ 16324575 (+) False XLOC_003372
TCONS_00006609 mRNA upstream 856260 16216964 ~ 16282275 (+) True XLOC_003372
TCONS_00006606 mRNA upstream 959345 16166117 ~ 16179190 (+) False XLOC_003371
TCONS_00006631 mRNA downstream 842514 17984167 ~ 17994777 (+) False XLOC_003382
TCONS_00006632 mRNA downstream 842515 17984168 ~ 18081864 (+) False XLOC_003382
TCONS_00006633 mRNA downstream 842701 17984354 ~ 18081744 (+) True XLOC_003382
TCONS_00006634 mRNA downstream 881812 18023465 ~ 18030903 (+) True XLOC_003383
TCONS_00006635 mRNA downstream 896076 18037729 ~ 18039583 (+) True XLOC_003384
TCONS_00006600 other upstream 1015453 16122786 ~ 16123082 (+) True XLOC_003369
TCONS_00006599 other upstream 1054927 16070438 ~ 16083608 (+) True XLOC_003368
TCONS_00006591 other upstream 1236340 15886970 ~ 15902195 (+) False XLOC_003365
TCONS_00006578 other upstream 2120011 15017185 ~ 15018524 (+) False XLOC_003358
TCONS_00006572 other upstream 2697709 14431365 ~ 14440826 (+) False XLOC_003353
TCONS_00006621 other downstream 186912 17328565 ~ 17328681 (+) True XLOC_003376
TCONS_00006622 other downstream 298938 17440591 ~ 17497093 (+) False XLOC_003377
TCONS_00006623 other downstream 299654 17441307 ~ 17494543 (+) False XLOC_003377
TCONS_00006624 other downstream 300234 17441887 ~ 17494277 (+) False XLOC_003377
TCONS_00006625 other downstream 300234 17441887 ~ 17500788 (+) False XLOC_003377

Expression Profile

//