RNA id: TU216821


Basic Information

Item Value
RNA id TU216821
length 255
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G160090
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33484306 ~ 33501430 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttgaagcagcagagttagtgatattcatgataaaatcaaaacgaacaactgtttgagaattaaaccaaagtttggtctttgagtatttatttacatttgcaaatggagaaaacacagtttcaaaggtacacgcagcacaactgaaaatgtctttctaacctaaagtctaaacatccaaacatcatatagtgaagaaactctgttaagccacccctctaaatgtatcttttagtatggccatagttgaaaagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641853.1 lncRNA upstream 23256 33458543 ~ 33461050 (+) True LOC120574303
TU216800 lncRNA upstream 43544 33440551 ~ 33440762 (+) True G160071
TU216799 lncRNA upstream 54446 33429637 ~ 33429860 (+) True G160070
XR_005641860.1 lncRNA upstream 129197 33354196 ~ 33355109 (+) True LOC120574309
TU216687 lncRNA upstream 133419 33349908 ~ 33350887 (+) True G159969
TU216852 lncRNA downstream 56573 33558003 ~ 33558223 (+) True G160120
TU216853 lncRNA downstream 63517 33564947 ~ 33565263 (+) True G160121
TU216855 lncRNA downstream 81173 33582603 ~ 33583281 (+) True G160123
XR_005641852.1 lncRNA downstream 137199 33638629 ~ 33639114 (+) True LOC120574302
TU216899 lncRNA downstream 275509 33776939 ~ 33783583 (+) True G160164
XM_039824597.1 mRNA upstream 432290 33038717 ~ 33052016 (+) True LOC120574295
XM_039824598.1 mRNA upstream 438683 33038717 ~ 33045623 (+) False LOC120574295
XM_039825142.1 mRNA upstream 857625 32606839 ~ 32626681 (+) True LOC120574734
XM_039824591.1 mRNA upstream 1057935 32410079 ~ 32426371 (+) True LOC120574291
XM_039826019.1 mRNA downstream 7677 33509107 ~ 33511123 (+) True LOC120575298
XM_039824595.1 mRNA downstream 27232 33528662 ~ 33543161 (+) True LOC120574293
XM_039826020.1 mRNA downstream 65040 33566470 ~ 33569127 (+) True LOC120575300
XM_039823767.1 mRNA downstream 248237 33749667 ~ 33754337 (+) True LOC120573877
XM_039823766.1 mRNA downstream 248237 33749667 ~ 33754337 (+) False LOC120573877
TU216677 other upstream 172701 33307566 ~ 33311605 (+) True LOC120574300
TU216679 other upstream 172701 33307566 ~ 33311605 (+) False LOC120574300
TU216651 other upstream 321495 33162395 ~ 33162811 (+) True G159938
TU216537 other upstream 1018773 32464555 ~ 32465533 (+) False LOC120574088
TU216535 other upstream 1018888 32464555 ~ 32465418 (+) False LOC120574088
unassigned_transcript_873 other downstream 93878 33595308 ~ 33595379 (+) True trnap-cgg_4
unassigned_transcript_883 other downstream 117707 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_884 other downstream 132635 33634065 ~ 33634138 (+) True trnap-agg_19
TU216984 other downstream 665650 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 681669 34183099 ~ 34183661 (+) True G160318

Expression Profile