RNA id: TU216899


Basic Information

Item Value
RNA id TU216899
length 6500
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G160164
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33776939 ~ 33783583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taggAGCCAAAGTATAAGAGTGccaaagtataagagcgccaaactCTGcgtaaagcgtgatttatggttctgcggaggctccacgtaGAGCTTTCTCCATAGCCGACGTAAGAGGCCTGAGGATAATACTTGTACGTtgctgtgtgtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtcccctgttctttctgaccacggtgggaaatctgtagcaggaaaagttaaccctatccttgatttcatgttgtttatggggAAAGAAGGAAATGAGTCGTGGGGGGAAATGCAATGCTGCCGATCGACGTGCGTTGCCGTgaacgtgtagttacatttttcgagaggtggcgtcaggctacggcgtagggtcggtAGCTTGACGTACCTACATATGTAGCCGCGGCatagatttaacgcagaagcataaatcacgcttaagtCGGCCTTAAAGAGGCAGACAAAcacaggagaccggggtttgcGTCTCGTGAGAAAAGCAACGTTTAAAAAGTTCTTTAAGGCCCTAAGGTTGTGAAGTAGTTATGTGCTCATTTTAGTAGTATAcgtgactcattttaagccaattcctgatcttttcctaaccctaaccttgtTTTgtcgcctaaacttaactatttTTGTTTCACAACTTTAACTgttcaaaatcaaaacaaaacatcaTAAAATCCAAGTTTAGAACacaatttattatttcttctttaAGTGGGGAACTGTTCCTGAACAGATCATTACAAGTTTGATATGGAATGATTTCCCACATCCAATCGTAGTTCTTTTAAAGAGAAGTCTCTGCTGAATACCAAAAATCTTCCTCAGAACTGTCCCTTTAACTGAACGGATATAAACATTTTGGCTATATTAGTTTATAGTTTTTCTATGTACAGAACTTGTGCTAGTTGAATTAGAGataactgaatatatttgtggGACAATTAAAACCCCTGCACATTAATATCATAACTATAACGTGAGTAAGTGAAAATCTctgaaagaaacacaacaaagcAAAACACAGAACCAGAGATTTATGCTGTGTTACATTTACGGTCGGAACTGGGAATGACGGAGCGGAGTTCATGTGCCGTTgaaaacaagactttcacccaggaaacaggtgttcatgtcccgggaGTGTTTCAATCCATACCAtcatttttctaatcttaactagacgttttggtgtctaaacttaactgtcgtcgcaGCATGACTATACatggctaaacttaactgtaatggCCTCTAAGAAGACCGTCccctcacggtgctctgtacccggctcacagtcaccttttctcatCTGAATTTAACTGTTAAGACGCTATatttaactgtcatgtgaccggctGGCGGTTGCCCATTTTGAACAATATTTTACGAATTGgtgtgcataacttttcgtacgatatacaaacctgttcatgagaatacATTCTCCATTTAATTGAAACATTTTGGTCccataaaaatgttttgttcagCGTTCTGCCAACCATGCTACCGCTAGCGTTCGCCGTCCACGTTTAACTGCCGGTAAATCTCCGTTGGATGACTCGCTTAAAAAGGGTTGACAATCAGCAAATTTTcctctttagcatttagcttagcgcagcacCATAGCAACCGTGAACAAAAAACTGTCTTGACCGTGTCGTCCTCCCCCAGCTGCGCCCTTTTGGTCAAAAATCGTCCCATCGTCAGACTTCAAAACGCCGGTCCACAAACCAAGGGGAGGCGTCACAGATGCTATGTctgttatttttacagtctgtgcATTCTCCAGACTTTCAAAGTAACTTAACTAGTTCTGTTTCACAACGCTTGAAAACGTGTTTTAAACCGCACAGATTTAAAACAGCCACCGTGCGTCATTAGCATTTTTGGTATGAGGACTTGTTGGTCTTATGTAACATTCGGCATAAACATAGGTTACATAACCCACATAAACTAGTCATTTcgacccaaaccacaatcttttccaaAACCTAACAAAGTAAACAAAGTAAAACTTCGTTGGAAGTTTATTGGCCAAACTGACGTAGGGCCACCGGCCAATCGGTATTTGATGAGTTAGgattgagaatgtgttggtttgTTTGATTAAAACTAcggttaaaaaaattaaactatatatatttgtgCTTTTAAAGATTTATGTTGGTTTGGGTCTGCACATTGTGCACAAAATATCACTACCGGTAGATATTCTTTTTTCACTACTTTTCAACATTCTCACACgcatcgcgtaaaatacggacgcttggtcaggtgcctttggcgtttgtttagatgctaaaagtctcctttagcgtcagatCTAAACACGTTTTATCTAAACGCGCTAGGTCGGGACTATTGGTGTCACttacgggacagttgggtttaagaaaagaagaatggggcagttgggtttaggaaaagaagaatgggaccgTTGGGTTTATGAaacatgaaccccggtctcctgggtgaaagtcctgtgttgtttgacccatccacccccctctccccccccaaCCAATCTCCCTACGCAGAAATTCGGGCATTGCAGTGGACATTTCCGACTTCCCAGTTAAACTGGAATGCAGCATTAACAGTCAGTTTAGATGAAAAAAGTTGAACAACACGAGGCTCAAGCAAAAGTTCGTACAAAACAGTGTGCAAGCACACAACAAGAGCAAAACTCAGGGAAGCTAGCATTCGTACCAGGACCATTGGTTTTGCATAATGTGGTTAGTAAACATGGCatgctacatacagtacagcagaGGGTGGAGGCGGAGTCAAAATGCAAGTCGTACTTCCTACTCCACCTCGAGCCTGACGTCACCTGACCAAACCTACACAGAGATTGTGCAAAGTTCAAACGTGTCACTGCTTATTGAGTTTTATCAAAGAGAAGGGAAATCCCCTCCCTCCCCGGCGGACCACCATGGGATCGTATTACGTAAAAAATATGAACTGTAGTGATCGGGGAGAGACAGATAATGTTTgtatcccgtttgaattgagccatgaattacaaaCATGATGttcgtcagtttaaaagataattttgcaaggGAAGAAAGTCTCTGTTTGTTGTATGTACCGTTTAGTCACCATCGCTCgctggctagctagcttagcacTGAGGCAGACAAACACAGGGGAGCGGGGTTTGTGTCTCGGGCGAGAGatagacatcgtagcttcagagaGACAACTCTTAGACACTTTGGGCTGACGGGTCTTACTAATGACGCATTTTCACATTctgatacttcaacagttttacCACAGAGACTTTGTTCCCTCGCTAAATTATCCTCTAAACTGACAAACATCAGatgtgtaatccatggctccATTCAAACGGGATTGAAAGACTGTTTatctctccccgttcactaggGGTCCACCATAGGGGGAGGGACATCGCCTCTCTATAGTTAGAGATAGCGCATTACAAGCAGCgccaatggtatgaaacggtccacacttcctgtctcccaaatgggcgtggcctcgtttgaaaGTGTAGTAAACGTTGTGTGGATGGATGAGAAGTTATATTtgtgtaatttattaatattttctgttgttaacattagatatttacactagggctgcactttaaaatgcaactgacattctatttttttatacaaGACTGAAAGAGTGTACCTGTAAGTACAGACGTTTTCTTGTCCCGTACCTCTGTTTTTAAGTGCCCTAGTTAACTTTTTTAAGACGCTGAGTGTGAACACAACTCTAAAGAGGCGTGACGGtggacacagagacaggaagtTCCTCTGATTTGTTGGGGCGTTTCGCTCGGTTTTGATCTTCACAGCAGCGACGTCGTCTCTAAAAACACCAATGTGCTCCATGACtaagtgagaaaaaaatgtcttttagcAGGCGGACATGTTACAATAtccaatattatatatttacaaaGTGCTACTCAGTTAGCTCTATGGCTAAATGAGGCTACATTCTTTTTGTGAAAGCATTGtgtaataaatactgtaaacatGCACAGGTTATAAGAGAGGAGTTTTTAGTTTAGAGAGGATAACAGCTTTACGTTCCTCAAAGTTCCCACCTTGGGAAACAGTTTGTTTCCACACACGGTTAAAGAAGAGAGAGGCTGTTCCTGCAGGTTCGGCTCCACACTCGGGCGTTTGGCACTGAGGCTCTGACAGCTGACAAAACGCTGACTGGACAAGGGCGTTTTATGTATAAAAGCTGTTAAATCATCCTAGTCCAAATAAGCTTGTCCCGGTGAGTTTTATAGCTTCATATTGCCATgttcttttttatgtttatgtcaCGTGTTTTATGGCCCTTcaacaacaagaacaacccagATTTTAGGTTTGTTAATTAAACGATAAAAGCCATCATAAAAGCTTAACTCTGTGCTGCTTCATCACACACACCTTCATAATAATGCTTGACGGGtagcaagggcgtaactttgggttcaacattgggttTGAGATTTCCACTTTTGAACAGACTTGACATTTTGAACATACAGCAATTtttgccttttctgcatcaatttatggtacAGTGTCGAAGTAACGAGGGGCTGCTCACAGTcagcggtggaggaagtattcaggtCTCTTAGTCAAGAAATAGGTAGTAATACTATGGTGTAGAAATACTGGAGATAATCGGAGAGAAGAGCGCACCAGAGTTGGAGATGTTGTGATTAAACGATCAGCGTCTTGAAACCCAAAATATAACATCATcataatatttcttttttaacaaacGTTATGCCCAACGAGCCAATGAGCCTATCGAGTTATTGAGAGCTGAAGTGACTAATAACTTTAAAACGGAGCCAGTTGTGTGGCTGCCTTCACGCGTTTGGATCAAATATTCCAATAATTTAAGCAGACGAACAAACGCCATTTTCCCATAAACCCTTTCGATGTTCACGGTGGCGAAAAACGTCGCGTTTTGCCAGGAGAGACCGCAAGCGAGTCCTTGAGTGTGTGCTCGGTAAGTTCAGACGGAGAAGACCGAACGCCATGGACGTTTTTCCAGACAGCAGAGATTACAAACCATACTTCACCAAATGCAGAAGTCGTGTGACAACATTAGTTTCGGGGTTGTATTGGCAACAACCAACGCTGGCTATTATAAATGAAAGTGTGAACATCATACGTGGGCGCTGATGTCAGTAAATGATTAAGTACAGACTTGAACGACGTGCATGCAATGATTTTTGGAGTAGGGGTGTAAACCATACATCGTTTCAATCCCCAACAATCCAATATCGTCGATACAAAGTGAGAATATCAAGACGTACCGTCATCATTATTTTGAAAGTCCCACTTTTTATATACATTCTTTTAATAAAAAgggtagtttgtttttaatttgaatgtctggaagagctaagtaatgaaattgtcaaatcatattttcGTTTTTTCTGtaagtatatatatgtgtgtgtatatatatatataaaaaggtaACGGATTGTGTGAAATGTGCTTATATATATCGTCTCGTATTGGTCGAGGCCGCTGAATTGAAATGGTATCGTGGTAGACTTAGCTGTGTTTGAAATCGTTCCCTCATTAACTCCCTATTCCCTATACAGTGTTTATTAcactgtgtgagagtgtgtgtgtgagtgtgtgggtctgtctgtgtttttatgtgtgtgtgtatgtttgcgtgtgtgtgtgtgtgtgtttgtgtactatTTCTGCgatagggaacggtttccaACAGAGCAATTGTAATATCCGCAAATATCATATCGTCCATAGAATCGTATCGTGATAAACGTGAGATTCACACCCCTGGTTAGTTAAGAGCAGCTCGATAAGAAGTGACGTCAggactccagcagcagcagcagcagcagcagcgtcgTGTGTGTTTTGCCAAAAAACACCGACAGGAACAGCTGGAAGATGAAGATACAAGTCATTCTCACAGTACAGAGACTCTCACAGTTTGTCTCCGTGTTGAGCCATTTGCAACATCGCCCACTTCTCAGTTCAGCTGAAACACCAAAGTTTCTAATCATTTGGCATCGAAACGGTGAAATGTTTGCACCGCCACTGGCCCGAATAATCCCATTTCCGTAGAGGCGGATATGTCACACTTCCGTGACGGGACTTGTTCGTGGTTGAGAGGAGATAGAGTGAATGAAAACGAGCGTCGTGCGATCCATCCTCTTCTCCTCCGTGTGAGTCGAGGGGTGAGGGGTGTGTCGGTCGTGTCGGAGGTAGAGCGTCAGGGCGGATCCATGCTCGGCGTGCAGCGAGAAACAACAGCAAAAAGGACAGGAACAGATTGTGTTTTTCATCCGGTGCAGCAGGCGCTTTGAGAAACGATGGTGCTTCAGGGAGTCTGGAAGGGGGGGGGTTGTGTCGGTCAGGAAGTCGGTCGGGAAGTCGGTCGGGAAGTCCGTGAAGTCGCCGCTCCAgacgattttttttaaatcag

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641852.1 lncRNA upstream 137825 33638629 ~ 33639114 (+) True LOC120574302
TU216855 lncRNA upstream 193658 33582603 ~ 33583281 (+) True G160123
TU216853 lncRNA upstream 211676 33564947 ~ 33565263 (+) True G160121
TU216852 lncRNA upstream 218716 33558003 ~ 33558223 (+) True G160120
TU216821 lncRNA upstream 275509 33484306 ~ 33501430 (+) True G160090
TU216902 lncRNA downstream 19733 33803316 ~ 33803848 (+) True G160167
TU216929 lncRNA downstream 74711 33858294 ~ 33858593 (+) True G160193
TU216933 lncRNA downstream 105702 33889285 ~ 33890763 (+) True G160196
TU216949 lncRNA downstream 216909 34000492 ~ 34000728 (+) True G160212
TU216950 lncRNA downstream 220240 34003823 ~ 34004024 (+) True G160213
XM_039823767.1 mRNA upstream 22602 33749667 ~ 33754337 (+) True LOC120573877
XM_039823766.1 mRNA upstream 22602 33749667 ~ 33754337 (+) False LOC120573877
XM_039826020.1 mRNA upstream 207812 33566470 ~ 33569127 (+) True LOC120575300
XM_039824595.1 mRNA upstream 233778 33528662 ~ 33543161 (+) True LOC120574293
XM_039826019.1 mRNA upstream 265816 33509107 ~ 33511123 (+) True LOC120575298
XM_039825977.1 mRNA downstream 27088 33810671 ~ 33814588 (+) True LOC120575259
XM_039826022.1 mRNA downstream 68776 33852359 ~ 33854888 (+) True LOC120575301
XM_039825412.1 mRNA downstream 205894 33989477 ~ 33996069 (+) True LOC120574905
XM_039825429.1 mRNA downstream 230951 34014534 ~ 34024559 (+) True sgf29
XM_039825431.1 mRNA downstream 230966 34014549 ~ 34023702 (+) False sgf29
unassigned_transcript_884 other upstream 142801 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 157732 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 181560 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 244675 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 465334 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 383497 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 399516 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 1178517 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 1262134 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1453713 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile