RNA id: TU216933


Basic Information

Item Value
RNA id TU216933
length 658
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G160196
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33889285 ~ 33890763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttcttgacattatgaaatgaaAGTTGATTAATCTTTTGAGTTAATGACCGCATGTTATGCTCCTTTTttaaggttcataattgtatttagaggttataccagaataggtttacatggtttaaaagGTATGGTAAGATGTTAGATGTGATTTTAATCtaatacactttttttcaacttaagTGATTATTTCCTCACGGTCACGAAGCTCTCTGTTTTCCATGATGCTTCATATTTCATTTGATGCACACCTGTACCTTGACGACAGATGTGGCACTGTCTGACATGGTGGCTCGGACGGTAACACGTTCACCTTTGTGAGTCAGACTTTGGGAGTCTTTAGCTTTACCTCTGACAAACCCTGACTGTGGGTAAGTGACGTTACACATCTCTTCAAAAAGGCTTTCATCACCCTTTCTATTATTGTCGAAGACTCCCACTGCGTACGTGTTCGAGTACATGATGTAGTCATAAGGGACAGAGAACATGACAGCCACTTTTTCAAGGCATTCCTCTTTGGACTTATTCTGGATATCGTAAGTGAAGACTCCAACAGCTCCACGTGCCGAGAAAGAAGTCTTGTTGAACTGAGCTTTGCCGGATTCAGACGGGCCAAGTGTTGGCGGCAGAGGACTCTTACAGAATCCACTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216929 lncRNA upstream 30692 33858294 ~ 33858593 (+) True G160193
TU216902 lncRNA upstream 85437 33803316 ~ 33803848 (+) True G160167
TU216899 lncRNA upstream 105702 33776939 ~ 33783583 (+) True G160164
XR_005641852.1 lncRNA upstream 250171 33638629 ~ 33639114 (+) True LOC120574302
TU216855 lncRNA upstream 306004 33582603 ~ 33583281 (+) True G160123
TU216949 lncRNA downstream 109729 34000492 ~ 34000728 (+) True G160212
TU216950 lncRNA downstream 113060 34003823 ~ 34004024 (+) True G160213
TU216954 lncRNA downstream 114886 34005649 ~ 34007769 (+) True G160214
TU216958 lncRNA downstream 146013 34036776 ~ 34043047 (+) True G160217
XR_005641934.1 lncRNA downstream 190979 34081742 ~ 34084121 (+) True LOC120574937
XM_039826022.1 mRNA upstream 34397 33852359 ~ 33854888 (+) True LOC120575301
XM_039825977.1 mRNA upstream 74697 33810671 ~ 33814588 (+) True LOC120575259
XM_039823767.1 mRNA upstream 134948 33749667 ~ 33754337 (+) True LOC120573877
XM_039823766.1 mRNA upstream 134948 33749667 ~ 33754337 (+) False LOC120573877
XM_039826020.1 mRNA upstream 320158 33566470 ~ 33569127 (+) True LOC120575300
XM_039825412.1 mRNA downstream 98714 33989477 ~ 33996069 (+) True LOC120574905
XM_039825429.1 mRNA downstream 123771 34014534 ~ 34024559 (+) True sgf29
XM_039825431.1 mRNA downstream 123786 34014549 ~ 34023702 (+) False sgf29
XM_039825430.1 mRNA downstream 124029 34014792 ~ 34024559 (+) False sgf29
XM_039825440.1 mRNA downstream 279564 34170327 ~ 34173144 (+) True LOC120574922
unassigned_transcript_884 other upstream 255147 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 270078 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 293906 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 357021 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 577680 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 276317 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 292336 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 1071337 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 1154954 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1346533 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile