RNA id: XM_039825412.1


Basic Information

Item Value
RNA id XM_039825412.1
length 1492
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC120574905
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33989477 ~ 33996069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGATTAGAACGTATGCAGGGGCCGAGCAAATACGACTTTGAGACGTGGATAAACAAAGCCAAAGTGCAGTTGCTCTGATTTAGGCTATCTTATAAAGAGGACCATCTCTCTTCGTCCAGTCTGTGCTTCTCTGTCTGCGCTTCGACCAGGAGAAGATCACAATGATGATGCGTGCGGCCGTGGGTCTCTGCGTCCTATCAGCGGTGATCTGTGTTGGCAGAGGCCATCACCATTTGGGTCACAGCGTTGACAAGACCGTCCAAGACACTGTAGCGGACGGCAGCGCCAACAGCGTCTCCCTGGTGAACGAAGCAAACAAAGAGTTTTCCTTCCGACTCTACAGGAAGTTAGCAGCTCACGCTTCCTCACAGGCAAAGAATATCTTCTTCTCCCCGGCTAGCGTGTCGACCGCCCTGGCTGCGTTGTCCGTGGGAGCGCAGGGGGAGACGCACCGTCAGCTTTTCAGTGGTCTGGGTTTCAACGGCTCCCTCCTGACGCAGACAGATGTGGCCCAGGCCTTCCAGATGTTCCTCCAGAGGGCCAACAACACATCTCAGGAGGATGCCAATGAAGGGACCGCCGTGTTCGTGGACAACAACTTCAAGCCGAAGCCGGAGTTCCTGCAGACCCTGAAGCAGTCGTACTTCGCAGATGGGTTCAATGTGGACTTCGCCAAAACCAAAGAAAGTGCTGATACCATCAATAAGTACGTGGAGGAGAAGACCAACGGGAAGATTGACAAGCTGGTGGAACtcctggatccaaacacagtcATGTGTCTCATCAGCTACATCTACTACAAAGGAAAGTGGGCGACTCAGTTTGACCCTAGGCTCACCAAGCAGGGCGACTTCAACGTGGACGAGAACACCAAGGTTCCAGCTGTGATGATGAATCGGGAGGACCGTTTCCACACCTATCACGACCACGAGCTGAAGACAACGGTCCTTCAGCTCCCCTTCAACAGCTCCTACTCCATGCTGCTGATGTTGCCTGACGTCATGGCAACACTGGAGAACGCCATCTCCCCGAACCACGTCACCAAATGGTTGAAGGCTATGGGACGCAGCAACCACGATGTATATATTCCAAAGTTCTCCATCAAGACTTCCTACAACCTGAACGATGTGCTGGCAGGAATGGGAATGACAGACATGTTTAGTGGTGGTGCGAATTTGAGGGGCATTTCAGAGGAGCATGGACTGGCAGTCTCAGATATTGTGCACCAAGCTACGCTGGACGTGGACGAGGCCGGAGCCGAAGCTTCAGCTGTCACAGGAATCTTCGTTGGATTTTCTGCGGTCTTGGACCCTGTCCCTGTGTTGAAGTTCAATCGTCCGTTCATGGTCATCATCACTGAACGTAACACAGAGAAAATCCTCTTCATGGGCAAGATTATCAACCCTACCGTCTGATGGATCATCACTTTGTGTTTGCTCGAGCACAGCTGTTGCATCTCAAATAAAGGAGTCAGAAAAAACCTTTTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216933 lncRNA upstream 98714 33889285 ~ 33890763 (+) True G160196
TU216929 lncRNA upstream 130884 33858294 ~ 33858593 (+) True G160193
TU216902 lncRNA upstream 185629 33803316 ~ 33803848 (+) True G160167
TU216899 lncRNA upstream 205894 33776939 ~ 33783583 (+) True G160164
XR_005641852.1 lncRNA upstream 350363 33638629 ~ 33639114 (+) True LOC120574302
TU216949 lncRNA downstream 4423 34000492 ~ 34000728 (+) True G160212
TU216950 lncRNA downstream 7754 34003823 ~ 34004024 (+) True G160213
TU216954 lncRNA downstream 9580 34005649 ~ 34007769 (+) True G160214
TU216958 lncRNA downstream 40707 34036776 ~ 34043047 (+) True G160217
XR_005641934.1 lncRNA downstream 85673 34081742 ~ 34084121 (+) True LOC120574937
XM_039826022.1 mRNA upstream 134589 33852359 ~ 33854888 (+) True LOC120575301
XM_039825977.1 mRNA upstream 174889 33810671 ~ 33814588 (+) True LOC120575259
XM_039823767.1 mRNA upstream 235140 33749667 ~ 33754337 (+) True LOC120573877
XM_039823766.1 mRNA upstream 235140 33749667 ~ 33754337 (+) False LOC120573877
XM_039826020.1 mRNA upstream 420350 33566470 ~ 33569127 (+) True LOC120575300
XM_039825429.1 mRNA downstream 18465 34014534 ~ 34024559 (+) True sgf29
XM_039825431.1 mRNA downstream 18480 34014549 ~ 34023702 (+) False sgf29
XM_039825430.1 mRNA downstream 18723 34014792 ~ 34024559 (+) False sgf29
XM_039825440.1 mRNA downstream 174258 34170327 ~ 34173144 (+) True LOC120574922
XM_039826025.1 mRNA downstream 217453 34213522 ~ 34218731 (+) True zgc:66474
unassigned_transcript_884 other upstream 355339 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 370270 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 394098 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 457213 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 677872 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 171011 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 187030 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 966031 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 1049648 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1241227 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile