RNA id: XM_039823766.1


Basic Information

Item Value
RNA id XM_039823766.1
length 3108
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC120573877
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33749667 ~ 33754337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCACTGCATCAGTGTTATTTTTTATGGAGTCTTTTCAAACAGATTACTACAAGTTGTTTGGAAGGAAATCTGTGAGGAGACCTGTGATGATAATCTGTGATGGGTCCCTTGTTCTGATGCAAGCTGTTGCCTACAGTTTTTGTAAACATTCTTTGGAGAGCTTGCTCAGTGTGTACTATGACATTGTCACTGGACAGTTGAAAGAGGTCATGAATATGCCAATTCTTCATCGCTGCCTAAGCCACATCATGAAGAATGCCAAAGTGTTCTGCAAGAAACATTCCCCCAAACACTACAGACTGTCCATGCATCTTTTTGGCCTCCTGACAAGTGCTGCCACACTGATGGAAATGGATGACATTATTACAAGCATGGCAGTCCTGTTCTCAAGTCCTCAGAGTGGTGACAACGTGGAAAAACACTTCCAAAACCTTCAGAACAGGTTGCAAACAATTGGCTTTTCTGAAAGCAGTGACCGTGcagaaaatgctgaaaatgACTTTGAGATCAATCTGGGGCACACAACATTTCATACTCATTTTGCGGAAATAGTGGCAAACGCACCTGTAGATGTAAAGGGTGAGCCAAATGAGTATCATTCACCTACATTCATGCctaacctggtgaaatatttcCTACCTCAGGCAGTTTTGTGGTCTGGTCTTATGCTGGGTGATCTTGGCCGCCATGGAAAAGGACCAGCCTACAATCATTTTTCCAAGATCTTTATGCGATGCAGTCAGTCAGGCACACAGAACTACACTGAGGACAACAAGACTCAGGCTATAATGGAGAAAAGCCAATGGGATCTGAAAAAAATTAGATTCCAGAGACGTCGTCTCACAAGGCTTGACGACTTTGTACAGATTTATCAGCAGACACATAATGCTCTCTTGATGGAGTTCTCTGACTCAACACGCAAGAGAAAAACATACAGGGTAAATGTTGAGCGCTGGAGAAAAAGGAAGCCTTCCAAGAAAGGCATCTATGTGTCACCAATAAAGAAGAGTTTCCCATTCAGGACAACAAAAGTGGCTCCAGTCAAAGGACGCAAACCAGGTTTGGAGAGACCACAGACAGTGACTGACACCAGCTCGACAGGACCCAAGTCGGAAAAGGAACCTTTAAGGAGCACTGACATCCCAAAAAAACCTGGGAGTACAACAACATCTGTAAATAAAAACTATGGACCATGCTGGCAAGGAGCAGACCCCTCAGAAAAGAAATCTGCAGCAAGACTACAAAGGCCTCCACAGGTCCCAAAACATAGCAAAATGACTGCTGTTCTTCATCCGTACCACTGGCTTAGCTGTGATGAGATAGATTTTGCATCATACTTGCTTGCAAGCGAGTACCCTCACATTCATGGCTTtcagtcaagtgttttatttagtgttttaCATAAGGGAGGGATTGTGGGTACTCCAAGCAGCCCATTTGTGCAAATTTTACACACTGGGAACAACCACTGGGTAACTGCTAGCAACCTGTTTTGTCGGAACAATCAGGTTTGCATTTATGACAGTCTTTCGACAGTGctaaacaacaaagacaaacaagttTTGTCATGGTTAATAAGGCCAAAGGAAGACAAATTTACAGTTATTTACCCTGGTGTCCAACATCAGTCGAATTGTAGTAACTGTGGTTTGTTTGCAATTGCTTTTGCATTTGCATTGTGCTGCAACCTGAGGCCAGAAAACTGCAAGTTCCGTGAGGGCCGGTTGAGGACTGAACTTTTAACTTCCTTCAAGAAAGGACAAATCCATTttaaaacagagccaagagTTGGTGCTCCAAAGTCAGGACAAACACATGTGAATGTGTACTGCATATGCAGGACTGCACACTGCAGTGAAGTAATGGTAGAATGTTCTTTGTGCAAGGGGTGGTATCATCCTAACTGTGTGAACATACCACAAAATGCCATTAGTGGGGATGATGACTGGAATTGCCACAACTGTACTggctaaatataaaaaagaaatgacatttTCTTGCATTCAATTTAGGAAGTCCAATTTAGGAATTTCTTGAATTCActtacatttttcattgctttgattattcagtgtgccgatgtgcaatcggcacaatgactattgtttctcatacttTTAATATTATTCCGCCAGTTTTTTGTCCCGCTTAGGCTCACGAAGCGTTGCCAACACGCGCACACAAATGACATCATCACGTGTGTAACGTtcgggaatggtgtgctatgtgTTTTGTAAGAGATTTGCCGCACGGTTTTCACGAAATCGGCCTAAAAAACGTGAAAAATTGTCCCATAGACTTGAATGGGGAATCGCTTAACATCGCTCAAAACAAGCCCCGTTTGGGACCATgctgtatcgccatactttaatgtagaaaaaagattaaaagtttaaaccgaagacaagaTTTTGGCgtttattgggctgaatgggctTTCGGATATCAAGCACGTTTTCTACGAAATCACAGTTTACGTATCGTCGTCttttcagaccgtttcagattttcccatgtgtgtgtatggggccgAAATGTTGAGAGTTAGAGTGGGAGTCAGTGTGGAGCTGAAGTACGATTCTCGGaattttttccaaacaaattgctctcccttctacagttttcactcttcatacatcatacttggtcaaaatgtaggaaatcttgtggcggtcgcagacatgtgactatggaATCCCCCGGACGTACACTGCCGATAGAAAAAATGGAGTTACAGTACGATTCGCTGAAAtttatttccaaacaaattgctctctccCGTGCAATTTTCATTCTAcatacatcatagttggtcaaaatgtaggaaatctgaAGGATGCAGatggttccctgtttgttagctgctctgtgtcccatatatttcataccacaaacataaaaaccacatcaatgcgttcgcCAGACTTTTATCTCTCTGGTGATCATAATATTTTGCCGTTTGGACCCATGGTTTTTGACTTACAGAACAAACTTTAGAGTATTAATTATCATTACATGTTGGACCCATGGAAGAcactgtctccccctccctacccctgcactgtggaaatcaccatagcaacaagttctgacacaaacacattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641852.1 lncRNA upstream 110553 33638629 ~ 33639114 (+) True LOC120574302
TU216855 lncRNA upstream 166386 33582603 ~ 33583281 (+) True G160123
TU216853 lncRNA upstream 184404 33564947 ~ 33565263 (+) True G160121
TU216852 lncRNA upstream 191444 33558003 ~ 33558223 (+) True G160120
TU216821 lncRNA upstream 248237 33484306 ~ 33501430 (+) True G160090
TU216899 lncRNA downstream 22602 33776939 ~ 33783583 (+) True G160164
TU216902 lncRNA downstream 48979 33803316 ~ 33803848 (+) True G160167
TU216929 lncRNA downstream 103957 33858294 ~ 33858593 (+) True G160193
TU216933 lncRNA downstream 134948 33889285 ~ 33890763 (+) True G160196
TU216949 lncRNA downstream 246155 34000492 ~ 34000728 (+) True G160212
XM_039826020.1 mRNA upstream 180540 33566470 ~ 33569127 (+) True LOC120575300
XM_039824595.1 mRNA upstream 206506 33528662 ~ 33543161 (+) True LOC120574293
XM_039826019.1 mRNA upstream 238544 33509107 ~ 33511123 (+) True LOC120575298
XM_039824597.1 mRNA upstream 697651 33038717 ~ 33052016 (+) True LOC120574295
XM_039825977.1 mRNA downstream 56334 33810671 ~ 33814588 (+) True LOC120575259
XM_039826022.1 mRNA downstream 98022 33852359 ~ 33854888 (+) True LOC120575301
XM_039825412.1 mRNA downstream 235140 33989477 ~ 33996069 (+) True LOC120574905
XM_039825429.1 mRNA downstream 260197 34014534 ~ 34024559 (+) True sgf29
XM_039825431.1 mRNA downstream 260212 34014549 ~ 34023702 (+) False sgf29
unassigned_transcript_884 other upstream 115529 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 130460 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 154288 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 217403 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 438062 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 412743 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 428762 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 1207763 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 1291380 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1482959 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile