RNA id: TU216902


Basic Information

Item Value
RNA id TU216902
length 491
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G160167
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 33803316 ~ 33803848 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtagagagtagtatgcaGAGAGacgacagtagagagtagtatgtagagagacagcagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacagcagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacagcagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacagcagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacagcagtagagagtagtatgtagagtagtatgtagagagacaacagtagagagtagtatgtagagagacagcagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagagacaacagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216899 lncRNA upstream 19733 33776939 ~ 33783583 (+) True G160164
XR_005641852.1 lncRNA upstream 164202 33638629 ~ 33639114 (+) True LOC120574302
TU216855 lncRNA upstream 220035 33582603 ~ 33583281 (+) True G160123
TU216853 lncRNA upstream 238053 33564947 ~ 33565263 (+) True G160121
TU216852 lncRNA upstream 245093 33558003 ~ 33558223 (+) True G160120
TU216929 lncRNA downstream 54446 33858294 ~ 33858593 (+) True G160193
TU216933 lncRNA downstream 85437 33889285 ~ 33890763 (+) True G160196
TU216949 lncRNA downstream 196644 34000492 ~ 34000728 (+) True G160212
TU216950 lncRNA downstream 199975 34003823 ~ 34004024 (+) True G160213
TU216954 lncRNA downstream 201801 34005649 ~ 34007769 (+) True G160214
XM_039823767.1 mRNA upstream 48979 33749667 ~ 33754337 (+) True LOC120573877
XM_039823766.1 mRNA upstream 48979 33749667 ~ 33754337 (+) False LOC120573877
XM_039826020.1 mRNA upstream 234189 33566470 ~ 33569127 (+) True LOC120575300
XM_039824595.1 mRNA upstream 260155 33528662 ~ 33543161 (+) True LOC120574293
XM_039826019.1 mRNA upstream 292193 33509107 ~ 33511123 (+) True LOC120575298
XM_039825977.1 mRNA downstream 6823 33810671 ~ 33814588 (+) True LOC120575259
XM_039826022.1 mRNA downstream 48511 33852359 ~ 33854888 (+) True LOC120575301
XM_039825412.1 mRNA downstream 185629 33989477 ~ 33996069 (+) True LOC120574905
XM_039825429.1 mRNA downstream 210686 34014534 ~ 34024559 (+) True sgf29
XM_039825431.1 mRNA downstream 210701 34014549 ~ 34023702 (+) False sgf29
unassigned_transcript_884 other upstream 169178 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 184109 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 207937 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 271052 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 491711 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 363232 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 379251 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 1158252 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 1241869 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1433448 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile