RNA id: XR_005641934.1


Basic Information

Item Value
RNA id XR_005641934.1
length 316
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id LOC120574937
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34081742 ~ 34084121 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgagcctctcaaagtgaagtctgtttccccagatccgccactgcACGGGAGCTGCGCAGACCGGACGCGCCACAACTGAAATGAGTCTGCCCAGCGGGTGTGGGCCGGACTGGACACGCCACAACTGAATAGAGTCCACCCGGCAGGTGTGGGACAGATCCACAGGAGCTGCGCAGACCAGACGCGCCACAACTAATGGAACGCTTTTTTTCTGCATAAACCCGCAACTCTATTTGAAATGCAGAGAGGAAGACTGCAGGCTGCACCGTCTTTGTGATTATTGgctacgtcttacagcagggctggactggccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216958 lncRNA upstream 38695 34036776 ~ 34043047 (+) True G160217
TU216954 lncRNA upstream 73973 34005649 ~ 34007769 (+) True G160214
TU216950 lncRNA upstream 77718 34003823 ~ 34004024 (+) True G160213
TU216949 lncRNA upstream 81014 34000492 ~ 34000728 (+) True G160212
TU216933 lncRNA upstream 190979 33889285 ~ 33890763 (+) True G160196
TU216980 lncRNA downstream 66307 34150428 ~ 34151399 (+) True G160239
TU217081 lncRNA downstream 100155 34184276 ~ 34184516 (+) True G160321
TU217094 lncRNA downstream 131800 34215921 ~ 34216485 (+) True G160331
XR_005641927.1 lncRNA downstream 159992 34244113 ~ 34246753 (+) True LOC120574932
XR_005641925.1 lncRNA downstream 187997 34272118 ~ 34273185 (+) False LOC120574928
XM_039825429.1 mRNA upstream 57183 34014534 ~ 34024559 (+) True sgf29
XM_039825430.1 mRNA upstream 57183 34014792 ~ 34024559 (+) False sgf29
XM_039825431.1 mRNA upstream 58040 34014549 ~ 34023702 (+) False sgf29
XM_039825412.1 mRNA upstream 85673 33989477 ~ 33996069 (+) True LOC120574905
XM_039826022.1 mRNA upstream 226854 33852359 ~ 33854888 (+) True LOC120575301
XM_039825440.1 mRNA downstream 86206 34170327 ~ 34173144 (+) True LOC120574922
XM_039826025.1 mRNA downstream 129401 34213522 ~ 34218731 (+) True zgc:66474
XM_039826027.1 mRNA downstream 206765 34290886 ~ 34296422 (+) True LOC120575309
XM_039825432.1 mRNA downstream 435203 34519324 ~ 34522700 (+) True LOC120574915
XM_039825439.1 mRNA downstream 451839 34535960 ~ 34550715 (+) True LOC120574921
unassigned_transcript_884 other upstream 447604 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 462535 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 486363 33595308 ~ 33595379 (+) True trnap-cgg_4
TU216817 other upstream 549478 33463255 ~ 33532264 (+) False LOC120574293
TU216679 other upstream 770137 33307566 ~ 33311605 (+) False LOC120574300
TU216984 other downstream 82959 34167080 ~ 34167646 (+) True G160243
TU217078 other downstream 98978 34183099 ~ 34183661 (+) True G160318
TU217208 other downstream 877979 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 961596 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1153175 35237296 ~ 35237377 (+) True trnas-uga_23

Expression Profile