RNA id: TU217081


Basic Information

Item Value
RNA id TU217081
length 241
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G160321
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 34184276 ~ 34184516 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagaggtaggcagatttggcagcaatgagggcatctttgtaggcgatgagatgggatttataggcttcatgatggactgtgagggatgatttctttgtcagacgttcaagttggcggccagtttgtttcattttccggagtgcaggtgtgtaccagggtgaagaggtgttaaaagtgacgagttttgttttgaggggggccagggtgttgagggaggtagacaaggtggagttgaggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU216980 lncRNA upstream 32877 34150428 ~ 34151399 (+) True G160239
XR_005641934.1 lncRNA upstream 100155 34081742 ~ 34084121 (+) True LOC120574937
TU216958 lncRNA upstream 141229 34036776 ~ 34043047 (+) True G160217
TU216954 lncRNA upstream 176507 34005649 ~ 34007769 (+) True G160214
TU216950 lncRNA upstream 180252 34003823 ~ 34004024 (+) True G160213
TU217094 lncRNA downstream 31405 34215921 ~ 34216485 (+) True G160331
XR_005641927.1 lncRNA downstream 59597 34244113 ~ 34246753 (+) True LOC120574932
XR_005641925.1 lncRNA downstream 87602 34272118 ~ 34273185 (+) False LOC120574928
TU217105 lncRNA downstream 87603 34272119 ~ 34273253 (+) True LOC120574928
XR_005641929.1 lncRNA downstream 94630 34279146 ~ 34281366 (+) True LOC120574933
XM_039825440.1 mRNA upstream 11132 34170327 ~ 34173144 (+) True LOC120574922
XM_039825429.1 mRNA upstream 159717 34014534 ~ 34024559 (+) True sgf29
XM_039825430.1 mRNA upstream 159717 34014792 ~ 34024559 (+) False sgf29
XM_039825431.1 mRNA upstream 160574 34014549 ~ 34023702 (+) False sgf29
XM_039825412.1 mRNA upstream 188207 33989477 ~ 33996069 (+) True LOC120574905
XM_039826025.1 mRNA downstream 29006 34213522 ~ 34218731 (+) True zgc:66474
XM_039826027.1 mRNA downstream 106370 34290886 ~ 34296422 (+) True LOC120575309
XM_039825432.1 mRNA downstream 334808 34519324 ~ 34522700 (+) True LOC120574915
XM_039825439.1 mRNA downstream 351444 34535960 ~ 34550715 (+) True LOC120574921
XM_039825426.1 mRNA downstream 409435 34593951 ~ 34603781 (+) True LOC120574912
TU217078 other upstream 615 34183099 ~ 34183661 (+) True G160318
TU216984 other upstream 16630 34167080 ~ 34167646 (+) True G160243
unassigned_transcript_884 other upstream 550138 33634065 ~ 33634138 (+) True trnap-agg_19
unassigned_transcript_883 other upstream 565069 33619137 ~ 33619207 (+) True trnap-agg_18
unassigned_transcript_873 other upstream 588897 33595308 ~ 33595379 (+) True trnap-cgg_4
TU217208 other downstream 777584 34962100 ~ 34966949 (+) True G160423
TU217328 other downstream 861201 35045717 ~ 35054519 (+) True LOC120575316
unassigned_transcript_885 other downstream 1052780 35237296 ~ 35237377 (+) True trnas-uga_23
TU217642 other downstream 1441999 35626515 ~ 35648984 (+) False LOC120575321
TU217802 other downstream 1905104 36089620 ~ 36125552 (+) True G160851

Expression Profile