RNA id: TU243399


Basic Information

Item Value
RNA id TU243399
length 411
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G179721
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32366447 ~ 32420471 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggacttttagcgtgtatagagccagcatatctccaccagactccatgtaaataatcaggacttttatcatcgtaaaacacacttcattcaaagtggacagaaactaaataaaactatcaaaagccatcttggttcatctttccactgttccaacaatcaccactctggtttggttgaaataaacccttaattcacccatttacatgtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctgtctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgccgctctatacacgctaaaagtcc

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0000245 spliceosomal complex assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243368 lncRNA upstream 34160 32272423 ~ 32332287 (+) True G179707
TU243387 lncRNA upstream 81505 32284125 ~ 32284942 (+) True G179713
TU243370 lncRNA upstream 90684 32275468 ~ 32275763 (+) True G179709
TU243346 lncRNA upstream 111656 32250073 ~ 32254791 (+) True G179687
TU243360 lncRNA upstream 147758 32218199 ~ 32218689 (+) True G179699
XR_005636736.1 lncRNA downstream 49077 32469548 ~ 32526687 (+) True LOC120545737
XR_005636735.1 lncRNA downstream 49077 32469548 ~ 32515320 (+) False LOC120545737
TU243521 lncRNA downstream 107530 32528001 ~ 32528292 (+) True G179789
TU243525 lncRNA downstream 113219 32533690 ~ 32534547 (+) True G179793
TU243530 lncRNA downstream 127579 32548050 ~ 32548320 (+) True G179798
XM_039780268.1 mRNA upstream 60864 32295848 ~ 32305583 (+) True kctd9b
XM_039780275.1 mRNA upstream 74519 32276341 ~ 32291928 (+) False march5l
XM_039780277.1 mRNA upstream 74519 32276341 ~ 32291928 (+) False march5l
XM_039780278.1 mRNA upstream 74519 32276341 ~ 32291928 (+) False march5l
XM_039780276.1 mRNA upstream 74519 32276510 ~ 32291928 (+) True march5l
XM_039780293.1 mRNA downstream 21539 32442010 ~ 32444645 (+) False LOC120545732
XM_039779072.1 mRNA downstream 324065 32744536 ~ 32745879 (+) True LOC120545081
XM_039780254.1 mRNA downstream 337743 32758214 ~ 32760074 (+) True LOC120545704
XM_039780250.1 mRNA downstream 382635 32803106 ~ 32805329 (+) True LOC120545697
XM_039780279.1 mRNA downstream 519939 32940410 ~ 32949424 (+) True psmb6
TU243294 other upstream 266905 32079177 ~ 32099542 (+) True G179655
TU243298 other upstream 266905 32089428 ~ 32099542 (+) False G179655
TU243292 other upstream 274316 32089428 ~ 32092131 (+) False G179655
TU242927 other upstream 886353 31387747 ~ 31480094 (+) True G179407
XR_005636691.1 other upstream 2055553 30264383 ~ 30310894 (+) True zmiz2
TU243411 other downstream 21584 32442055 ~ 32448815 (+) True LOC120545732
TU243616 other downstream 544490 32964961 ~ 32984052 (+) True LOC120545086
TU243673 other downstream 695294 33115765 ~ 33187628 (+) False G179903
TU243664 other downstream 769550 33190021 ~ 33197836 (+) False abraxas1
TU243663 other downstream 769648 33190119 ~ 33197836 (+) False abraxas1

Expression Profile