RNA id: TCONS_00071807


Basic Information

Item Value
RNA id TCONS_00071807
length 7672
RNA type mRNA
GC content 0.44
exon number 19
gene id XLOC_036782
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51304099 ~ 51340931 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATGACAGATTTTTGTGTTTGCAAAGTGCAAACTATCACTTTTAATTTAAAGGTCAAAGTGTTTTGACGGGTTTTGAAGGCCAGTCCAGGTTTTACGCCGAGCCCACCAGCTCCGCCATATTTACTCCACTCCGGATTTTTAGTCTAGCCGCTGTGGCGCGACAGTAAAACAAAAGACAGTCGGCCATTACGGTGGAGATTTTCAGCTGGAGTTTGTTATTTTCTCGTCACATGAACTGAAGGCCTTCGGTATTATTCAGGAGATCATTCTTTGGACTAAAATGATGTGAGATGAGCCTGAGAGCGGGCGGGTTCATGTATACAGTGTGAGCGTCTCTTTTGTTTTTGTGGGAAGTGTGGGGCTAAAGCATCATGTTCCGTCCTGGAGGAGAGCGAGACTTCCAAACGTCAGCCCGGAGGATGGGGACGTCCCTGCTCTTCCAGCTGTCGGTTCACGAGAGAGAGTTGGATCTCGTTTTTCTGGACCACAGCTATGCCAAACCCTGGAACGCCCACCCGGATGCCAGCAGTGCCCGGCCCACCCGCATGCTGTTCGTCACCCCTCGACGGCAGCCGGAAGCGTCTGGGGATTCGGATATGTCCATTGATGTGGAGACGGTCACACCCACTCCAATGCCTCTCTATGACAACCAGAAGGCCCGTAGTGTGATGAACGAGTGTGACCGGCATGTTCTGTTCGCCCGGACAGTCGCTGATGGACCGCCGCCTCCCGATGACTGGGAAGAACACATCAACAAGACTGGCTGGTCATTGGCTCAGAACAAGCTCTTTAATAAAGTATTGAAAGCCCTGCAGGCAGAACGACTCGGCAGACTGGCCAACGATGGTGCCTGTAATGAACCCGTCTTACGCAGAATAGCTGTGGATAAATGCGCTCGCAAGGTCCGCCATGCCCTGTCCAGTGTCAGCTGGGACATAAAGCTCACACACTGGCTTCATAACACACTTCTGGAGTCTTTGAGCCTCGCTATGTTGGCGGCTTACCTTGACGTGCTGCAGACACTCAAGAGCAAGgtGCCGTCCCTGATAGACAGGATGCTGCTGTCGTCTTCTGTAAAAACAGGAGCCGCAGGGGCCGAGGCTCTTTCTCTGCTCCTCAAACGCCCGTGGGACCCTGCAGTGGGTGTGCTATCACACAACAAACCAAGTAAACTTCCTGGATCCCCGCTGATCCTTATTGCTCCATCTGGACCAACCAACCCTGCCTTTCCTACATCCCGACGAATGAGATTCTGGCAATCTCAGCTGTCCTGTCTTGGGAAGGTCATTCCCATTAACGTTCATGTTGGCAGTGGAGCCAACGTTGGAATCACGCAGTGTTTGGAGCACATGATCGGCACAGTCAGAGGAAAAGTCATCGAGGTTCACAGTCACTTCCCTCACAAACCGATCATCTTGGTGGGCTGGAATGTAGGATCATTGATGGCTTGTCATGTGTCTTTAATGGAGTACATGActgctgttgtgtgtttgggtttcCCTCTCCAAACGATCAGTGGGCCACGAGGGGATGTTGATGATCCGCTGTTGGACATGAAGACTCCAGTGCTGTTTGTGGTTGGTCAGAACGCTCTGCAGTGTAGTCCTGAAAACATGGAGGAGTTCAGGGAGAAAATCCGGGCCGATAACAGCTTGGTTGTTGTCGGAGGAGCAGACGACAGCTTGAGGATCAACTCCACTAAGATGAAGACAGAAGGCCTGACCCAGACCATGGTGGATCGCTGCATTCAGgaCGAGATTGTTGATTTTCTGACTGGAGTTTTGACCCGCTCTGAGAGTCACGGCCATGGCTCTGGTGAAACACGTGATTTAGATGCTGAGAAGAAGAAGCCTCGCCGCGAGCTGCCCTTTGACCTTGACAGGTCTCGGCCGTCTTCACCTGCTGTGAGGGTACCCATCTCTCCTTCTGGTTCAGAGGATATGTCCAGTGTCTGCAGCAGTCCCACAGCCAGTCCCAAACCCAAGACTGTCGGCCTTTCTCCAGCTCAGAAATCCAGTCTCATCACTGCCACGCAACTGCTGAAGACCCACATGCAGCGTTCTGGAACTGtactcacacacaaacaagcacaagTGCCGGTGCCCAGTGAGCAGGTGGAGGGTTTAGAGCGAGACGACATGAGGGTCCACCTCAAGAGGAGACAAACTCCCAGTCCAACACCAACCAAAGCCTCCAAACGAGCCAAGATCAAAGTCACCATCGTTTCACACGGAGACGCGGCGGGAAACACCCCTGGCTCCACTGCTCAGGAAGTGGGTTTGTCAGGAAAGCCTCTCGGTCTGACAGTGGGCCAGACGACAGTATCAGGGGCCAAAGAACTGTCTGAGCTTCTCAGTGCACAAAGGTCAGGAGGCTTAGCAGAGGTGTCTGGAGCTTTGGCCTCTAGCGAGGGCTCGTTTCACAGTCTGCAGGGGAGCGTTATTTCACGCTCTTCCTCGCCTGTCCAGGCCGCCGGTACTGCACAAGCTCCCTCTGCCAGCAGTCTGCTGCAAGGTCTCAGCCTCAGTCTGCAGGAGATCAACACTAAATCTCCAGGCGTTCCCTCAACCACACAGGTGTCCGGAGGAAAGCCCCAGGGTCAGGGGCAGGTGTTGAGCTCTCTAAGCCCAGGCAGTGGTACTCTAGTGCGGGCAGTGCCGATGGTGTCCACAGGCTCCGGGATGACCAAAACCACAGCCATCCACCAGCTCCTGACCAACGGCGGATTGGCAAAGCTAGCCAATAGTCTGCCGGGCCTGGCCCACGTCTCCAGTCAGAGCTCGGGTACGTCCTCAACGCCGCGCTCCAAACAGAGGCGTCCCAGATGAGTACACATCTAGAGTACTAGAGTAAGGTCAAATCCATAGGCAGGGTGACCAGGATAAATAAATAGTGTGTAAATATGTTTGATAAACCAACATCTGTGCTGATTTgtactgtttttttaatgcatgtaaaGACATTTATTGGGTGATCTTCTTCAAAAGTGCGAACTCTAATGTACTTTTGCATCACATAATTAATTTTAGTGCGTTCTTATGCTGATTATACATATGCAGGGCAACTTTTTGGGCAATGTTTATTGGGCAATTTTGCAGAGCGATGTTGCttggctatttttttttattaagaatgGGCAACAGTATTGTATTTAGCCCATTACCCTATCTAGAACAGTTTATTTACAGCAGCATTGCTCAAAAAGTTGCCCTGTGTATCATCAGCATTAGAGGTTGACCTTTGAACTCAAACTGCTGTCAGGAGCATCCAAATATTTATGTGTTGCCACATCGCCGGCTTCATTCGTGTACATGCTTAATACGTCCACCGTGTTTGACGTTTCATTTGGCTGATCAGTTTTCTGTTGGATGAGGTGTGTTTGTAAACCATACGCTTGCTCTGCTCACAAAGACATCCATTAAATTCCCAACTACAAACCGTTTTTGTTTTCCACTTCCTCTTCTTTGTGTCATGATTTCTGTTTTCCGTCCTCCCCCAAACTGCACGTTTGAGTGGTCTCtggtttttgtttcatttcttttTACTTCCCAGCATTTTAAATGAGGATAGATTAAATCACTGAAGTAATTATGGGTTATTATTAATCTATAGATGTGTGGTGGAATGTAGTACAGCTAATGCAGATGTTTGACAGAATACAGGGGTTTTTAATGCGAGGCTATCTATTGTGTTAAATCAGAAATTATGATTTGAACATCGCCTAATTCAGCATCGGATTGACAATGTTAGATGGTTTAACAAGGTTGAACTaggtatattttaatttatttaaatattttgacccTTTAAAGTGAATTAATCTGTAAACTCTGTTCACATGGAAGAATTGTTGTTTTATAAAACAGTCTATATTCAATATTGATGAGTAATTTTATTTGACTTATCAATGTATGTAATTATTAGATCAGAATTAACAGTTTTAACTCCATTGATTTAATTCTTCCTAATATATGTATTACATATAACTATTTctaacaaaacaacaaatattgCAATGAAAaggtttcaaaataaaataattgcatacatttaaaaagtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattgttataagagttgtaagagcagcaaataataacttgacttctagttgatcatttggaaaagtgtcagaaggtggatttttcagctgaatcatctgttgatctgcatcccaatcatcacaaatactgcagaagacctactggaaccagcatggagccaaaattctcacagaaatcagtcaagtttggggaCGGAAAAGttttggtttagggttacattcagtatggggctgtgtaagagatctgcagagtggatgatcaacatcaacagcctgaggtatcaagacatttgtgctgcccattacattacaaaccaaaggagagggacaattctccagcaggataacgctcctcatacttcagcctccacatcaaagctcctaaaagcaaagaaggtcaatgggctccaggattggccagccaagtcaccagacttaaacattattaagcatgtccgGGTTAGGATGAAGGGgtggcattaaagatgaatccaaataatcttgatgaactctgggagtcctgcaggaacgctttctttgccattccagatgactttattaatcggtgatttgagtcatgtcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtctccactgcagcaggactttatattctatactggacattatttctgttcagtgacaagacttttgtctaagcaaagtcagagcttactgtcctaatgaaatcattaaaaatcaaggcatgatcagattttattgtggtaaaataagcgtaatctagaggcctttgcctttcatataagccacttctgataccaaatgatcaactagaagtcaagataacatttgttgttcctaaaacttggaaaggcgacaagacttgtcaggtagaATTTTttcacataacacacacacacacacacacacacacacacatatatacatatacaaatgtTTGTCAGTTTTTTTGAGATATGACATATCATAATTTGTAGTCTTTTATAAtctattattatgtatttagctaattaaaatgtgtatttagcataataaaataatgttgtatttattttatttattgtttttagaatgtttttttttatccaagtGAACCTGAATGTGTTATAAATGTTatgctcattcattttttttgcacaaattgtcATGTGTCTATGTCCAGTTCGGCAATATTCATTATAATGTATGCATTATGTTACTTTCCATACATTCATAATGCAACCCATGCTTTGGCTCCCTCTGCAGGCAGCACAACACAATACAGCCACACAAATCCGCTGAGAAGGGTATAAACAGGTCAGAGCCAGGTCCAAGCGGGTGGGCCTTCGAGCTCAAAAAGGGCTGTGCAAATctggagtttttatttaatttatttcatgatATTTAGAGttcaatattgtgctttatgaatgtgtacacctaaccccaacctcaagAGTAAccggttgtgttttattaacggcgacacctaaacccaacctcacagtaacctgatgtgttttattaatgtgaaCTCCACCTACACCACTTGAACCCAACCTACTTGCCgtttaagtccctcccacttggaggtgacccaacctacttgcggtgtaatccctcccacttggaggtcaccgGGCTGCAGCGTTACCTACTTGAATCCACTAGCaggttaaagggatagatcacctaAAAATTACAAtccggtcatcatttactcaccctttaaaaCCTGTAGAGtttcttctcttaaacacaaaagaagatattttgaaaaatgcgtTCAGCCCGTGCCTTTAATATTTGGAAAAacaattctatggaagtcaatggatgccagctaaccagcattcttcaaaatatctcattcattcattttcttttcggcttagtccctttattaatcagcgttcaccacagtggaatgaaccaccaactattccagcatatgttttacacagcggatgcccttccagctggaacccagtactgggaaacacccatacacactcattcacactcatacactactgccaatttagcttattcaattcacctatagcgcacgtgtttggactgtgggggaaaacagagcagaggaaacccacgccaacacggggagaacatgcaaactccacacagaaatgccaactgacccagccgggactcgaaccagcaaccttcttactgtgatgCGACTGAACCACCATGTCGCCTCCACCATGCGTcaatcttaataataaaaaatatttttgcatgaCTTTCCCCAAGGCGGTCCTTCAAATACCGTTAAGATTGTGTCAACAGAGATAATGATGTGTCTGCTTGATTAAGTCACCATTGTTTTGATTGTTGATTGTTTTTATTGGCTCTAATGAGGGAAGCCAGCAGAGGCTGAAAGGCATGAAACATAATGATAGACACTGATTAATGCAGCGGTTTGTGTCCTCAAAACATTGTGTGTTTAGCCGAATAACACTACACGAGCTGACAGTGAAGCTCTCAGACTGATTAAATGATGCTGGTCTAGTTACCCACTGAAGTGTTTGGCTGGTTTCTAGAGCAGAGGTtgccaaaaatctaaaaaatcaGCATACtggatatttatataaatatatatatatattatcttacAAGGAAAATATTAAGAACAATAACAACATACACTAAATGGTATAGCAATATCAACCAGTGGAATGAATCGCTCTTGGGGTATTTAGaatgttgctagggtattttgatTGATGGTTGCTACGTTATTTTGGATGGTTTCTTGCCTGTttttagatggttgctagggcgtTCTGGCTGATGGTTGCTAGGCTGTCCTTGGtggtggttgctaggttatttTGAGTGTTGCCGGGACACTCGGTTTGATGGTTGCAAGAACGttcaaggtgttgctagggtgttctgcctggtggttgctaggttatttTGGATGGTTTCTTGCCTGTTTTCAGATGGTTGATGGTTTGCTCTGGGTGATCGTGTTGTCTAggtgttggttactaggttattTAGGATGGTTGCTAGCGTATTCTGTTTGATGGTTGTAAGAGAGTTCTAggagttgctagggtgttctggttgatggttgctaggttattttAGATAGCTTCTTGGCTGTTTTTAGATGGTTGCTAGACTGTCCTAGGTTTTGTCTAGGTTGTGGTTACAAGGTTATTTAGAATGGTTGCTAGGATATTCTGTTTGATCGTTGCAAGAGAGttcaaggtgttgctagggtgttctgattgaTAGTTGCTACGTTATTTTGGATGGTTTCTTGCTTGTTTTTAGATGGTTGCTGGGGCGCTTTGGTtgatagttgctagggtgtcctaggtgttggttgctaggttattttGAAGGTTGCTAGGACATACTGTTTGATGGTTGCAAGAAAGTtcaaggtgttgctaggttgtttTGCCTGGCGGTTGGTAGGTTAATTTGGATGGTTTATTGCCTGTTTTTACATGGTTGCTGGGGTGTTCTGGTTGATAGGCT

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0043981 histone H4-K5 acetylation biological_process
GO:0043982 histone H4-K8 acetylation biological_process
GO:0043984 histone H4-K16 acetylation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0000123 histone acetyltransferase complex cellular_component
GO:0044545 NSL complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046972 histone acetyltransferase activity (H4-K16 specific) molecular_function
GO:0043995 histone acetyltransferase activity (H4-K5 specific) molecular_function
GO:0043996 histone acetyltransferase activity (H4-K8 specific) molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050809-132 Predicted to be involved in histone H4 acetylation and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be part of NSL complex. Orthologous to human KANSL3 (KAT8 regulatory NSL complex subunit 3).

Ensembl:

ensembl_id ENSDART00000178209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072090 lncRNA downstream 91431 51212413 ~ 51212668 (-) True XLOC_036781
TCONS_00072089 lncRNA downstream 349855 50953658 ~ 50954244 (-) True XLOC_036777
TCONS_00071800 lncRNA downstream 405742 50889589 ~ 50898357 (-) True XLOC_036776
TCONS_00072541 lncRNA downstream 792212 50508761 ~ 50511887 (-) True XLOC_036772
TCONS_00071793 lncRNA downstream 1044745 50258022 ~ 50259354 (-) True XLOC_036768
TCONS_00071813 lncRNA upstream 4419 51345350 ~ 51349111 (-) True XLOC_036783
TCONS_00071822 lncRNA upstream 130971 51471902 ~ 51507077 (-) True XLOC_036786
TCONS_00072542 lncRNA upstream 645879 51986810 ~ 51988347 (-) True XLOC_036793
TCONS_00072545 lncRNA upstream 956770 52297701 ~ 52310513 (-) False XLOC_036796
TCONS_00072547 lncRNA upstream 956770 52297701 ~ 52310513 (-) False XLOC_036796
TCONS_00071806 mRNA downstream 10798 51165980 ~ 51293301 (-) True XLOC_036780
TCONS_00071805 mRNA downstream 10834 51165392 ~ 51293265 (-) False XLOC_036780
TCONS_00071801 mRNA downstream 322924 50968990 ~ 50981175 (-) False XLOC_036778
TCONS_00071803 mRNA downstream 325036 50969448 ~ 50979063 (-) True XLOC_036778
TCONS_00071802 mRNA downstream 325052 50969448 ~ 50979047 (-) False XLOC_036778
TCONS_00071811 mRNA upstream 681 51341612 ~ 51349431 (-) False XLOC_036783
TCONS_00071812 mRNA upstream 686 51341617 ~ 51349429 (-) False XLOC_036783
TCONS_00071814 mRNA upstream 9522 51350453 ~ 51365566 (-) False XLOC_036784
TCONS_00071815 mRNA upstream 10046 51350977 ~ 51367298 (-) True XLOC_036784
TCONS_00071816 mRNA upstream 34377 51375308 ~ 51404806 (-) True XLOC_036785
TCONS_00071804 other downstream 276146 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 786196 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 1548200 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071744 other downstream 2131599 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071743 other downstream 2151624 49149904 ~ 49152475 (-) True XLOC_036746
TCONS_00071818 other upstream 93565 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071865 other upstream 2015848 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_04564233_04580815.mRNA False 3080 mRNA 0.50 19 CI01000050 4564136 ~ 4581278 (-)