RNA id: TCONS_00073822


Basic Information

Item Value
RNA id TCONS_00073822
length 3018
RNA type mRNA
GC content 0.51
exon number 30
gene id XLOC_037584
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 2949272 ~ 3034125 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATTTCACCGAAGATGGTCGCGGCACACACCTCCAGCCACCCGTCTGCATCTGCTGACTGGATCGTCTGTCTGGATAAGAGaccAGAGGAGCGTTCAGGGGAAGACGTGGACATAATCATGGTGCGTCTGAAAAGTGTGAAGGCCTTCGAGAAGTTCCACCCACCTCTTCTTCAGCAGATCTGTCTGTGCGGCTTTTATGAATGTCTGGAGAAAGGCATCACTCtgtacaGGCAGGGTGACATCGGCACTAACTGGTACACCGTCCTGTCCGGTTCTCTAGACGTCAAAGTCTCCGAAACAGCAAACCATCAGGATGCGGTCACCATCTGCACGCTGGGCATCGGCACTGCTTTTGGAGAGTCTATCCTGGATAACACACCCCGCCATGCCACCATCGTCACCCGAGAGTTCAGCGAGCTGCTGCGGATCGAGCAGAAGGACTTCAGGAACCTGTGGGAGaaTTATCGTCAGTGTATGGCTGGTTTGCTGGTCCCTCCCTATGGTGTTATGGACAGCGGCCCAAACGCTGACAGAATGCCTGACAAAGAGAATCTGAGCAACAGTTCTCCTGGACTATCACCCAAGCACTTAAATAAGGTGCCGTCAGAGAAGATACTTCGGGCAGGAAAAGTGCTACGAAACATCATTTTATCTCGAGCGCCTCATATGATAAGAGACAGGAAATACCACCTGAAGACGTACAGgcgGAGCTGCATCGGCACTGAGCTCGTTGATTGGCTGTTGCAGCACACATCATGTGTTCACTCTCGTGTTCAGGCTGTAGGGATGTGGCAGGTGCTGCTGGAGGAGGGAGTGCTTAACCACGTGGACCAGGAGCCGACTTTCCAAGATAAATATCTGTTTTATCGCTTTCTGGATGACGAAAGTGAGGATTCAGGAATGCCGAGTGAGGAAGACAAGAAGGAGAGTGACGAAGAGCTGCAGGACACGCTTCTGCTGCTGTCTCAGATCGGCCCTGATGCTCATCTGCGGATGATCCTGCGCAAACAACCCGGCCAGAGGACGGTCGATGACCTGGAGATCATTTATGAGGAGCTGCTGCACATTAAAGCCTTGTCCCATCTCTCCACCACTGTGAAGAGGGAACTCGCTGGTGTTTTAATATTTGAGTCGCATGCGAAAGCAGGCACAGTGTTGTTCAATCAGGGTGAAGAAGGGACGTCCTGGTACATCATCCTGAAGGGCTCCGTCAATGTGGTCATCTATGGAAAGGGTGTGGTGTGTACTCTACATGAGGGTGATGATTTCGGGAAGCTGGCTCTGGTGAATGACGCTCCTCGGGCCGCCTCCATCGTGCTGAGAGAAGACTTCTGCCACTTCCTCAGGGTGGATAAAGAAGACTTCAACAGAATCCTCAGGGATGTGGAGGCAAACACTGTCCGTCTGAAGGAACATGAAGAGGACGTGCTGGTTTTGGAGAAAGCTAACAACAGGAGCTCCAGTTCTTCTCCTCTCAAGTACACTGTGATGTCAGGAACTCCAGAGAAGATTCTGGAGCACCTTCTGGAGACCATGAAACTTGATTGCCAATTCTCAGAGTCAGATCCTGCTCTGGATGACTTTCTGCTCATGCACTGTGTTTTTGTCCCGAACAGTCAGCTGTGTCCACTGCTCATGACCCAATATCCTTCTTTAATAAATGAACAGGAGCGGATGGATTACACTCTCAATAACAAGCGCAGGGTGGTGCGTCTGGTGTTACAGTGGGCCTCCATCAACACGGACCACCTGCAGGAGGAGGACAGCTCCTTCAGCTTCATACAGGAGTTTTATGAGATGGTGTGTGAAGACTCCAGGCTCACTCCAGCCCTGAAGGACCATCTGCCCGAACTGGAGAAGATCATCAAGCAGAACTCAGATGACGGCAGACCCTCTCAGAAAAAGCACAAAGTCCTGCTGCGTCAGTTCAGCACAGGGAACGACAGGCTTCAGAAGAGACAGCCCATCAAAAGCACAGACGAGATCCTCTTCAAGGTGTACTGCAGTGATCACACCTACTCTACTATCCGTGTGCCCGTGTCTGCATCCGTCAGAGAGGTCATCGCTGCTGTATCCGACAAACTGAGCTCAGGAGACGATCTGCTGCTCATCCATCTCAACTCAGCTGGagataAAGAGCTTCTGAAGCCGTCTGATGTTTCCATCTTCTCATCTCTCAGCATTAATGGCCGTCTGTTCGTCTGCCCGAGGGACCAAATCGACTCTTTGACGCCGCTGCCCGAGCAGGAGGGACCGTCTGCAGGCTCCATGTCCACGTTTGAGCTCATGAGCTCTAAAGATCTGGCCCATCAGATGACCCTCTACGACTGGGAGCTCTTCCACTGTGTGCATgagcatGAGCTGATCTACCACACGTTCGGCCGACATCATTTTAAGAAGACCACCGCCAATCTGGACCTGTTCCTGCGGCGCTTCAATGAGGTGCAGCTGTGGGTGGTGACGGAGGTCTGTCTGTGTCCCGCGCTCAGCAAACGAGTGCAGCTCCTCAAGAAGTTCATCAAGATCGCTGCACACTGTAAGGAGTTTAAGAACCTGAACTCATTCTTTGCCATTATCATGGGTCTGGGAAACCCTGCGGTCTGTAGACTCAGTCAGACATGGGAGAAGCTGCCCAGCAAATTCAAGAAGTTTTATGGAGAGTTTGAAAACCTAATGGATCCCTCCAGAAATCACAGAGCATATCGACTTACAATGGCCAAGCTAGAACCCCCCATCATCCCCTTCATGCCCTTATTAATTAAAGACATGACTTTCACACACGAGGGAAACAAGACCTTCACTGACCGACTGGTCAACTTTGAGAAGATGagAATGATTGCAAACACAGTCAGAATCATAAGATACTGCAGAAGTCAACCATTTGATCAGGAAGCTCCGCAGGCGACGGGTAAAAGCCATCAGGACGTGCGCACTTACGTCCGCCACATCAGCGTGATCGATAACCAGCGCAGTCTATCACAGCTGTCCCACCGTCTAGAGCCCCGGCGGACATGA

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04670 Leukocyte transendothelial migration
ko04911 Insulin secretion
ko04261 Adrenergic signaling in cardiomyocytes
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000115138

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074960 lncRNA downstream 83147 2861221 ~ 2866454 (-) True XLOC_037581
TCONS_00073816 lncRNA downstream 83194 2861221 ~ 2866407 (-) False XLOC_037581
TCONS_00075282 lncRNA downstream 168778 2777346 ~ 2780823 (-) False XLOC_037580
TCONS_00075281 lncRNA downstream 168778 2777346 ~ 2780823 (-) True XLOC_037580
TCONS_00073813 lncRNA downstream 376810 2568344 ~ 2572791 (-) True XLOC_037578
TCONS_00075283 lncRNA upstream 96624 3130688 ~ 3132168 (-) True XLOC_037585
TCONS_00073824 lncRNA upstream 119662 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00075284 lncRNA upstream 231504 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00075285 lncRNA upstream 324333 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA upstream 340571 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00073819 mRNA downstream 4593 2896009 ~ 2945008 (-) False XLOC_037583
TCONS_00073820 mRNA downstream 13584 2896903 ~ 2936017 (-) True XLOC_037583
TCONS_00073817 mRNA downstream 57351 2879763 ~ 2892250 (-) False XLOC_037582
TCONS_00073818 mRNA downstream 57556 2885296 ~ 2892045 (-) True XLOC_037582
TCONS_00073815 mRNA downstream 355137 2592392 ~ 2594464 (-) True XLOC_037579
TCONS_00073823 mRNA upstream 100998 3135062 ~ 3149896 (-) True XLOC_037586
TCONS_00073825 mRNA upstream 363343 3397407 ~ 3400729 (-) True XLOC_037590
TCONS_00073826 mRNA upstream 456760 3490824 ~ 3496548 (-) False XLOC_037591
TCONS_00073828 mRNA upstream 464313 3498377 ~ 3519253 (-) False XLOC_037592
TCONS_00073829 mRNA upstream 465020 3499084 ~ 3519717 (-) False XLOC_037592
TCONS_00073809 other downstream 612298 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 672109 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073798 other downstream 990049 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073827 other upstream 456767 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 474254 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 1409854 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 3375093 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3683613 6717677 ~ 6717801 (-) True XLOC_037618

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU582889 True 280 lncRNA 0.50 3 CI01000350 2021100 ~ 2023712 (-)