RNA id: TCONS_00073829


Basic Information

Item Value
RNA id TCONS_00073829
length 2526
RNA type mRNA
GC content 0.43
exon number 15
gene id XLOC_037592
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3498377 ~ 3519717 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAATACTCATTCAAAGCAACTAAATCACCACGAAGCCAGACAAGTATAAGCTTTAATGCAGTATTATCTGTCATTTTACCACGCTTTAAAACTGCTTTATGTGAGGATTTATGTCGACAAGAGAAATGCTAGCAGTTACTAGCTTACTAGCAAATGATGGCACCTGAAAATATCTATCATTTTAATTAGAGCAACAAGAACAAATGTGTGTGTTCAAATTCGACTATTTAAGTAATCAGACGCTAACTTTTCTGCAATATTTTCGTTAATGCTAACTGATGCTAAGACTATGACTTTGAGCAACgctattaattattgttaattgtTAATTAACGTTAGTGTTTGTATAAAAGGATTTTAACCAGCAACTCACTTATACGCCATTTCCGAAGGTTATTCCTCAGAAATAGTGGTAGTCAAGTGTATTTTTATGAGTTGTGTGAGAAGAATCGTCCGTCCTCTATGTGCGCGCTCCCGTCTCCACGTGCACAGCGCCCCCCTGCGTGCACCCGCACCAGTAAAAACAGCTGTGCTTTACTGGCTTCAAGATATAATGGATCCTGCTCCAACGACTTTGGCAGATTATTGGCATCAAACCTTAAGATCCTGAGAAACATCATCCTTAAAGATGATACAGAATTCGTCAAAGTGTGGAGCAAGACTTCCAAGTCCCTCATCTCTTATGAAAGTGGACGGATATACTTTGATAATTACAGGTGTTGTTACAGCAGCCTTTTGCCGGAGCCAGAACTGCTGTATGAACTCCCCAGAACTCCCAAAACAGAGAAGATTGAAGACGCGTTATTGTGCCAGTGTCCTCTGGAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAGCAGATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAGGCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAGGTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAGTTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATGAGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTGGCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAACATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAATGCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAGACGTTCAGAATGGTGAAGTATGAAGACGAGCTTGATCTGCTGGCTGTGGTGGACATCACTCACGCTGAAGATGAAGGACAGGCTCGTCTTCGCCTGCATGACAATAAAACAGGCGCTTTAATGAAGAGAGTTCCTCTGGAGGAGCCCTGGGATGTGACCTACAGTCACGAGGTGTACTTTGACAGAGACACCATTATTCACACTGTCCAGGAGAAGAACAACAGCTTCTGTTGCCATGTTTATAAAATGAAGAGACCAGCTTCAGACCAACCATAATGAGCATGCTTCATATCATGtagaccaggtcctggaggtctggtgtcctgcagattttagcttgcctcaacacacctgcatggatgtttctagaaagcctagtaagagcttgattagctagcccaggtgtgtctgattggggttggaactaaactttgcaggacacacaggcccaggaccgagtttggacatgcctgatgtAGACAAAACAACGTAATAAAAGATGTCTGTTATAATGATGTCATGTTATAATGTAGATATTCTCCTATGTCGATGTTTGACAACTCGAGAGcagaaactatatatatttttgtattatgaaGCATGAATCTTTCACACTGTCATTTGTATTGGAGAAATTGCTGATCAGCGAGCATTCATGCATTGACATCAATGACCTGACACGGTTCTGTTTACTAATTTATATCAGTATGCAAACATTAACTCGTAACTTTCTTAATAAAGACAGAATTTTGTGACA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-071008-1 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleolus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Human ortholog(s) of this gene implicated in Woodhouse-Sakati syndrome. Orthologous to human DCAF17 (DDB1 and CUL4 associated factor 17).

Ensembl:

ensembl_id ENSDART00000145043

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075285 lncRNA downstream 103563 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 103830 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 103830 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00075284 lncRNA downstream 218633 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073824 lncRNA downstream 344798 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00073839 lncRNA upstream 412006 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075288 lncRNA upstream 1019758 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00075289 lncRNA upstream 1346383 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 1523370 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 1525258 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073826 mRNA downstream 2536 3490824 ~ 3496548 (-) False XLOC_037591
TCONS_00073825 mRNA downstream 98355 3397407 ~ 3400729 (-) True XLOC_037590
TCONS_00073823 mRNA downstream 349188 3135062 ~ 3149896 (-) True XLOC_037586
TCONS_00073821 mRNA downstream 464959 2949272 ~ 3034125 (-) False XLOC_037584
TCONS_00073831 mRNA upstream 102251 3621968 ~ 3653259 (-) False XLOC_037593
TCONS_00073832 mRNA upstream 102251 3621968 ~ 3653271 (-) True XLOC_037593
TCONS_00073833 mRNA upstream 146684 3666401 ~ 3671911 (-) True XLOC_037594
TCONS_00073834 mRNA upstream 179680 3699397 ~ 3866707 (-) False XLOC_037595
TCONS_00073835 mRNA upstream 230083 3749800 ~ 3834686 (-) True XLOC_037595
TCONS_00073827 other downstream 2505 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 1161781 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 1221592 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073801 other downstream 1543161 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073800 other downstream 1546051 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073841 other upstream 924201 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 2889440 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3197960 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 4002718 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 4122043 7641760 ~ 7655301 (-) True XLOC_037633

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000348_00021037_00028373.mRNA True 1698 mRNA 0.41 13 CI01000348 20758 ~ 28373 (-)