RNA id: TCONS_00073833


Basic Information

Item Value
RNA id TCONS_00073833
length 3084
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_037594
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3666401 ~ 3671911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGGAAGCCGCGACAAGACCTTCAAGTCTTGCTGAACATTTCTTTCGCGTTTTTTTCTTGTGTGGAGGGGCTGCTTTTTTAAAACGCGGGAAGCTTGAGGAACTCGAGGAAGCGTTGCCATGGCAGCTGTGGCTGTGCTGAGGAACGACACACTACAGGCGTTTCTGCAGGATCGCACTCCGAACTCCTCTCCGGAAAACAGCAAACATTCTCCTCTGGCACTTTTAGCAGCGACGTGTAACCGGATCGGTCACCACCACGGATCCACTCCCACGGACTTTATTCAAGTTCCCTACGACACCACCCTCGGCTCCCCGTCACGGATTTTCCACCCATGGAGTAATGAGGCCAATCATCAATCCACGCTTTCCAGCAACCCTTCCTTTGGACTATCCTCTAAATCTCACCTGCAGAGCTCCTACGCGTCCCACCATGAGCTCCCACTGACCCCTCCGGCAGATCCTACATATCCGTATGATTTCTCTCCGGTTAAGATGTTGCCATGTTCAATGCAATCTTTACAGTCCACCTGCCCGCCGACTTATGTACCTGCGGTTACCTACGCAGCACCTGCCCCCATCCCTCCAGCCATGCCTAGCTTTGTCCCGGGACACTCAGGCCTGGTGCATCAGCAGCAGAGACAGCTATCCCCAAATCCAGGGGAGGATATACCATGGTGGAGCCTTCAGCAAGGGAATCCTGTAGCCCATTCGGTGCACCCACACCGCTTCCCCATCCAAAGAGGCTTAGTGTTGGGACACACAGATTTCGCACAGTACCAAACTCAAATCGCAGCCTTGCTGCACACCAAATCTCCGCTGGCTACCGCCCGGCGCTGCCGGAGATGCAGATGTCCGAACTGTCAGTCGTCCAGCTCTAGTGATGAGCCCGGAAAGAAGAAACAGCACATCTGCCACATCCCCGGATGCGGGAAGGTTTACGGTAAAACATCCCACCTGAAGGCGCACCTGCGCTGGCACTCAGGAGAGAGACCCTTCGTGTGTAACTGGCTCTTCTGCGGGAAGAGTTTCACCCGGTCAGATGAGTTACAGCGGCACCTGCGGACACACACCGGCGAAAAACGCTTTGTGTGTCCGGACTGCTGTAAAAGGTTCATGAGGAGCGACCATTTGGCCAAACACGTCAAGACGCACCAGAACAAGAAGAGCAAAAGTCACGACAAAACCTCCGATTATGTGAAAAGAGAAGATCTGAGACCCGTGTAGAAGACTCAGACGACCATATAGACTAGTGCAATATCATCTTCAGGATCCTAATCaagtctaaaagaaaaaaaaattgtttattttctagtgctgggcaaagattaatcgcgattaaatCACATCCAAAAgtttattttgacataatattctaatgaagtttatttgtatagtgcatttcacaataattattgtgtcaaagcagctttacaaaggtatataagtttatatattattattatattagtgtgtacacagttgaagtcagaattattagccaccccccccccccccccctttgattttttttctttattaaatatttccctaatgatgtttaacagagcaaggaaattttcacagtatatctgataatattttttcttctggagaaagtcttatttgttttatttcggctagaataaaagcagttttaaattttttaaactctattttgaggacataattattagcccctttaagctatatattttttcgatagtctacagaacaaaccatcgttatacaataacttgcctaattaccctaacctgcccagttaacctaattaacctagttacgcctataaatgtcactttgagctgtatagaagtgtctttaaaatatctagtcaaatattatttactgtcattatggcaaagaaaaaataaatcagttattagaaattagttattaaaactattatgtttagaaatgggctgaaaacatctctccgttaaacagaaattacgGAAACaaaaaagggggggctaataattctgacttcaactgtatgtgatgcacatatttattcaaaaaacaaaactaaacaaaacaattttgtttcatagatatttaaatgtatatataatttgtatcattgtaatctaaatataaataaggaTTTTCTTAAATATACACATgcctgtgtgtatttatatatacataataaatgtacTCAGTAGGGTGGACTGGGACAGTGTTTTCACCTGGGAAAACTAATGTACTGCAGGTGTGTGGCGATCAGCAAGTTAAGCGGGGAGAGCAGGCCAGATTTGCAGTGGCAGGTCAGATTAACCATCAGACTACCTGGAAATGTACCCGGTGCTCCCTATGGGCAGTCCGCCCCCAGCACAGTACACATATTTGAATTACGTCAAAACCTTCACCTTGGAATGCAattaatttttgcccagcacgTTTGTCAGACTTGACTGCGAGGTTGTTTGTTTTTGGGGACTTGTAAATAAAATTTTCAAGTCTTTCTCAGTTCCTAAAGGAACCCTTGGGGGGGAGGAGGACGAGCTTCCCACCCCTGAGCTACTCAAAACGCTAACAAGTTCAAGCTTGTGTTAAAGATCTCTGTCTTCGGTGGAAGATTTCGTTACTCTGTAAATATATATCGATAGCTTTTGTTGAATGAAAGTGTCAGTTTTCGCTCCTTGTGGGGTGTTTTTAGCATGctataattgaaaaaaaactcTCTGTTTAACTCTcaaaactgtgtaaaaaaaaaataaagattatgaTCTGTACATGCGCATTCATACAGAAGAGAGACGGAGCTATTCAAAGTacatagatttattttttaaagaggaGAAATGCTTATTAAATTGATGTCAAAGTTCGAgttttgtagtgtgtgtgtgtgtgtgtgtgagagagagaagcTGGACAGAGAAACGGTGAAACTCTGTCTGTGATTGAGTGAAATGTCCCGAATGAAGCACTGTGAGATCCATCAGTTGTTAGGATATGTAGAGTTCTCATGTTCAGTTCAAAGGACAggttttttttacatacattatATGGTTTTAAGAACAGGCagcaaaaaaaatgacaataaagcaAACATT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030430-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within mesoderm morphogenesis. Is expressed in brain; margin; and tail bud. Orthologous to human SP5 (Sp5 transcription factor).

Ensembl:

ensembl_id ENSDART00000102900

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075285 lncRNA downstream 270880 3358397 ~ 3395521 (-) False XLOC_037589
TCONS_00075286 lncRNA downstream 271147 3374635 ~ 3395254 (-) False XLOC_037589
TCONS_00075287 lncRNA downstream 271147 3394009 ~ 3395254 (-) True XLOC_037589
TCONS_00075284 lncRNA downstream 385950 3265568 ~ 3280451 (-) True XLOC_037588
TCONS_00073824 lncRNA downstream 512115 3153726 ~ 3154286 (-) True XLOC_037587
TCONS_00073839 lncRNA upstream 259812 3931723 ~ 3951826 (-) True XLOC_037596
TCONS_00075288 lncRNA upstream 867564 4539475 ~ 4541821 (-) False XLOC_037600
TCONS_00075289 lncRNA upstream 1194189 4866100 ~ 4867439 (-) True XLOC_037602
TCONS_00073852 lncRNA upstream 1371176 5043087 ~ 5044088 (-) False XLOC_037603
TCONS_00075290 lncRNA upstream 1373064 5044975 ~ 5045989 (-) True XLOC_037603
TCONS_00073832 mRNA downstream 13130 3621968 ~ 3653271 (-) True XLOC_037593
TCONS_00073831 mRNA downstream 13142 3621968 ~ 3653259 (-) False XLOC_037593
TCONS_00073829 mRNA downstream 146684 3499084 ~ 3519717 (-) False XLOC_037592
TCONS_00073828 mRNA downstream 147148 3498377 ~ 3519253 (-) False XLOC_037592
TCONS_00073826 mRNA downstream 169853 3490824 ~ 3496548 (-) False XLOC_037591
TCONS_00073834 mRNA upstream 27486 3699397 ~ 3866707 (-) False XLOC_037595
TCONS_00073835 mRNA upstream 77889 3749800 ~ 3834686 (-) True XLOC_037595
TCONS_00073836 mRNA upstream 226221 3898132 ~ 3958533 (-) False XLOC_037596
TCONS_00073837 mRNA upstream 228764 3900675 ~ 3934963 (-) False XLOC_037596
TCONS_00073838 mRNA upstream 229413 3901324 ~ 4018452 (-) False XLOC_037596
TCONS_00073830 other downstream 146690 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073827 other downstream 169822 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073809 other downstream 1329098 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073808 other downstream 1388909 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073801 other downstream 1710478 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073841 other upstream 772007 4443918 ~ 4447104 (-) True XLOC_037598
TCONS_00073868 other upstream 2737246 6409157 ~ 6409271 (-) True XLOC_037613
TCONS_00073875 other upstream 3045766 6717677 ~ 6717801 (-) True XLOC_037618
TCONS_00073897 other upstream 3850524 7522435 ~ 7539023 (-) True XLOC_037632
TCONS_00073901 other upstream 3969849 7641760 ~ 7655301 (-) True XLOC_037633

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000348_00121621_00124566.mRNA True 975 mRNA 0.54 3 CI01000348 121615 ~ 124575 (-)