RNA id: XM_039801907.1


Basic Information

Item Value
RNA id XM_039801907.1
length 3541
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC120559858
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 27381245 ~ 27396360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGTGGTGATACAGATTAGGTCAGccactctctctcactgcttAGGTTCGTTTGGTTATCTCTACAGTTACTACTTGTCTTCTTTGTTATGTAACTtcatacatacattttacacacaaagaAAAGTGCACAAGACACATAATGGTAAACACACACCCACTATTGTGAGAAGAAAAAAGTAATACTTGACTGTACTGCCAATAATCTTTGCCAGATGGACAGCGTTGAGCGAATTGGCTTTCCTCACTACAGGCAGCCTTATCTTGCTGTCGCACTGGACGAAGCCCAGCTTGATGCCCTTGGACAGCGGGTAGAAAAGAAGTCCCTGTCATTTCTGGAGAAGGTGAAGGCACAATGTTGGTGTTCCGGTCCCAGGATGAAGAGCTTCCTACTGGGCTTTTTTCCTGTCCTGTCATGGCTGCCTCGATACTCCATCAGAGAAAACGCCATTGGAGACCTTGTGTCTGGAGTCAGTGTCGGGATGATACAGCTGCCACAGGGTATGGCCAACGCCATGTTGGTGGGAGTTCCTCCAGTGTTTGGTCTCTACACATCTCTCTATCCTCTGATCATTTACTTCATCTTTGGCACCTCCAGACACCTCTCTATTGGTACTTTTGCTGTCCTGGCTATAATGATTGGGTCTGTGACAGCCAACGTGGAGTTGCATAGCAACGACGTTGAAGAGAGTCAGATTGATGCGGAAGCGGCCAAAGTGAATGTGGCTGTACAACTCACCTTCCTCTGTGGCCTCATAcagCTCTTACTGTACCTGCTGCGTGGAGGCAGTGTGTGTCGCTGGCTGTCTGATCCTGTAATCAGAGGCTACACCACAGGAGCAGGTCTGCATGTGATCGTCCTGCAGCTGCCGCTGATGACTGGAATACCTGCACAGAGACATACTGGACTGCTGGCTTCAGTTTGGACTTTAAAGGATGTTCTGCATGGAGTGACCAGTGCTGTACCAGGAACGCTGTCAGTCTCCGCGGTTTCCATGGTAATACTCATCGGAGGCAAGATGCTGAATGAGCGCTTTAAGAACAAGCTGCCTGTCGCCATACCATGGGAACTGTTACTGatTGTCCTGGGCACCATCCTGTCAGTGCAGATGGATCTGGTTGGACAGCACACAGTCCAGGTGGTGGGACACATACCCAGTGGCCTGTCTTCCCCAgtccttccatctctctctcaggcCAGAGAGCTGTTCATTCCAGCTCTGTCTGCAGCTCTGGTCGGCTTCAGTTTCCTCTCAGCCATGGGCTCCGTGTTCGCCCACAAACATGGCTACCATGTAGACTCCAGTCAGGACCTGCTGGCTCTGGGTCTATGCAACACCATAGGAGGAATGTTCCAGTGCTTCGCTGTCAGCTGCTCCTTCTCTCGCAGTATGGTCCAGGATAGCATTGGTGTCAAATCACAGATGGCCGGTTTGGTATCAGCTCTGGTGATTCTAACTATCCTGTTGAAGATTGGTCCCCTCTTTGAGCAGCTACCAAAGGCGGTGCTGGCAGTGATCATCGTGGTGAACCTGCAAGGGATATTGGCTCAGTtcaaagatgtgtgtgtgctctggaAGTCTGACAGATTAGACCTGATGGTGTGGATAGCCTCGCTGATTTCAACGCTGGTCTTTAACCTGGACCTGGGTCTGGCTGTGACTGTTGTCTTCTCTCTGCTCACACTCATCTACAGGACACAACACGCCTCCACTGTTGTTTTGGGTCATATTCCTGGTACAGACTGTTACAGAGATGTGGGACTCTACACTGAGGCAAAGCAAGTTCCCGGGGTGACCATACTCTCCTATACCAGTCCTATTTACTTTGCCAACTCTGAACTTGTCTTCACACAGATCAAGCAgACAGTGAGTCGTGATCAGAAGAAGAACCCAGCTATAATCCACACctctacctcctcctcctcagcccaGACACCGACACACAGTCATTGCTTGGTTCTGGATCTCAGCTCGGTCACCTTCATGGACTCTGTGGCCATGCCAGCACTTCACAAGGTTGTAGAAGACTTGGAAGTCCAGGGTGTCAGTGTGTTTCTGGCAGCTTGCCCAGAGAGAGTTTTATCTCAGCTCCAGACTCAGGATTGTACAGCAGACAGCCTGCCCAGCTCCTGTCTCTTCCCATCGGTCCACCATGCTGTACAGCGCTGCCTCAGCACCTTGCCCAGGCCTCTGCAGgAAATCAATCCAGATGCAAGTGAATGTTGAACCTACATGACTGCTGCTTTTGAATGTAAATTACAGGACATCAAGACAAATCCTGGGGGGGGGATAGATTGCTGACAGAACAATCACagcttcattttattttaaaagaaagtCATTTACACTTTTCACAATATGTCTATGTGTACACTTCTCACACATTCCCAGACAATAAATGTAATTGTTCCCCAATTATTTTTGCACTATTATTGAGCTCTCTGTCATGAGCATTTTAGATTTGATTAAGGCCACTGAAGCTGACATAATGAGATGACCTGGAGAATGAAGGGAGAAACATAAACAGCCGTGGCTCCGTAAGCACTGAAAGCGCAGGATAATGCATGACAAATATTTCCAAATTAATTCATCAGTCACTAGTATGCTACTGTTAAATCTGTGTTTTCAAACCACTTAGTCCAGATGTAATAACTTGGAGTCTGAAACACTTCATTTGTTGCTCAGCCTTCAGAATGAGAGCTTCCTACAGTTGCacaataacaaaacacacaaaaatctgTGTGTATACACTCCTATAGCTACAAACCGGAGATGGGaatttactttgtttttataacTGCGTCATAGTATCCATCTACCCTGTTCTGTGATGAactgtgtggtttggattaaggGCAATGACAGTGTTGGTTTACTGTTGGTGACAAAGGCAGACAGTGAGAATGACAGAAAATATGTGGCTGCCCCTCcttctgtatttctttttttcaattagATTATCTTTATTTCGATCTCTAAAACCACGACCGCTAGTGAATCAGTCCTTGTAAGCTGTAAGCCAAGCTTTGTTCAAACTTACAGAGACATTCTAAAGGAAATCTCAAAGTTTTCAAAAGTCCCAAATCTGTCAGTCCATCTGTTTGGGGAAATGTGTCTAAATGAATTAGCAGACAGACTATTCCCATCTGATGAAATGATGCGGATAGGAGTCTGTGTTTGGAATATTTCACACAAAAGTGCAACATAGAGCAGCAAATAAGATACACAATGACCTAATGCAATCTATATATATGATAATGTCAGTGGGGATAATATGACTTTACTAATAACAAAACTACTAAACCAGAAAAATAAGGGGAAAACTGTATGTTAAAAGgttcatgtatgtatgtatgacgAAGGAAGAAGAACAAACTAAATAATCCTATGTTAGGATGGACATTGTAGTTTCCTGCACATTGTAAATACTAATCAGGTTTGTTATGAGTTTCCTCAACAATAGATAAAACTACCCTCTCAACTTGTCTCAATTGTAAGGACTGAAACAGGGAAGtgaatttgtttaaataaatgtcttt

Function

GO: NA

KEGG:

id description
K18059 SULTR4; sulfate transporter 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71575 lncRNA downstream 75679 27302502 ~ 27305566 (-) False LOC120558937
XR_005639209.1 lncRNA downstream 75685 27302392 ~ 27305560 (-) True LOC120558937
XR_005639208.1 lncRNA downstream 76712 27302392 ~ 27304533 (-) False LOC120558937
TU71570 lncRNA downstream 126087 27253608 ~ 27255158 (-) True G53540
TU71568 lncRNA downstream 166810 27213532 ~ 27214435 (-) False LOC120558995
TU71665 lncRNA upstream 163061 27559421 ~ 27595325 (-) True G53608
TU71678 lncRNA upstream 247816 27644176 ~ 27644595 (-) True G53619
TU71680 lncRNA upstream 267678 27664038 ~ 27665112 (-) True G53621
TU71686 lncRNA upstream 303845 27700205 ~ 27700504 (-) True G53627
TU71730 lncRNA upstream 322957 27719317 ~ 27724212 (-) True G53665
XM_039801903.1 mRNA downstream 714 27342161 ~ 27380531 (-) False LOC120559857
XM_039801900.1 mRNA downstream 714 27342161 ~ 27380531 (-) False LOC120559857
XM_039801901.1 mRNA downstream 2632 27342161 ~ 27378613 (-) False LOC120559857
XM_039801906.1 mRNA downstream 3805 27342161 ~ 27377440 (-) False LOC120559857
XM_039801905.1 mRNA downstream 9843 27342161 ~ 27371402 (-) False LOC120559857
XM_039801899.1 mRNA upstream 9056 27405416 ~ 27411803 (-) True wdr6
XM_039801898.1 mRNA upstream 21103 27417463 ~ 27534874 (-) True celsr3
XM_039800992.1 mRNA upstream 179814 27576174 ~ 27586501 (-) True dalrd3
XM_039800045.1 mRNA upstream 207878 27604238 ~ 27622170 (-) True impdh2
XM_039800046.1 mRNA upstream 231820 27628180 ~ 27643995 (-) True arih2
XR_005639389.1 other downstream 182418 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 191048 27189076 ~ 27190197 (-) False hyal3
TU71557 other downstream 210078 27163286 ~ 27171167 (-) False ifrd2
TU71558 other downstream 210078 27163286 ~ 27171167 (-) False ifrd2
TU71453 other downstream 415222 26961347 ~ 26966023 (-) True G53444
XR_005639350.1 other upstream 248423 27644783 ~ 27660646 (-) False xpc
XR_005639094.1 other upstream 2079649 29476009 ~ 29492973 (-) False clcnk
TU72353 other upstream 2364714 29761074 ~ 29765873 (-) False cdk11b
TU72358 other upstream 2364714 29761074 ~ 29765193 (-) False cdk11b
TU72536 other upstream 2574836 29971196 ~ 30065918 (-) False tafa5l

Expression Profile