RNA id: XM_039804104.1


Basic Information

Item Value
RNA id XM_039804104.1
length 3194
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120561138
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 36526718 ~ 36606316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAAAAGAAGCGTTCACTTCCTCACACAGGAGCGCGCAGCTTTTTGGAGAGAGTCAGTGGTGGTGTTGGgggcgagaaaaaaaaaagatactatACAGTCAGCGTTTTGGAGCACTTTTCAAATGAGTTCTTCTATCTCGTTAGAGATATTGGCACAGCTGACTGACCGTTTCGCGCCAGTTTAAGGAATGTTTTAAGGACAAATTGTCTCCAAGGGGCAATCGGAGCTGGCAGTCTGAGCCCTTATAATGCGGAGAGATCAAGTCTCAGTAGTTGGTCGGTATGAACGCAGCGCAGACGGACCCTGAGAAACTGCTTTCATGGATTGACTGATTGATTCgcatttgattttttatttttttgcccaaTACCAGAGGATTTGTCTGTGTCGTGGTTAgtctattataaaaaaaaaaataaaaaacaaaaaaaaatcgtgGATTATTGTTGGGAGTCGAGGGTTTTTGTCGGAGGTGCGTGGGTAACGAGGatattgatttttattattattattattgattttttttaacagttagCCTACACCTGGGTCAAGGATCCGAAGAGGGGAATTAACCTTTCATAAGGTGGAAATATCAGTCGTGCTGGACCTTAACTCATCTCTCCAACAATATGAAGTCTGTCACTGTGTGGATGTGCGTTTACAGCTTTCTCCTGCTCTTAGATGAGGCAGCGAGTTCCTGGGATGGTCCCTCAGCTGTGTCCGTGTCTTTGGCCACTGGGTCTCCAGGATCTCAGGGCACCGGGTCTGGGCCCGGAGCTCAGACAGAATGGGTGGACTGCATCCAGGCGAGTGACTGGTGCAACCAGAACCCTCAATGCAGCTCTCGGTACCGGGTGATGCGCCAGTGCCTTGTGGGCAAGGAGAAGGAAGCCATGCTGGACAACAACAGGGAGTGCCAGGCTGCCTTGGAAGTGCTGCTGGTTAGTCCTCTGTATGACTGCCGCTGCAGGAGGGGCATGAAGAAGGAGCTGCAGTGTCTGCAGAACTACTGGACCATCCACATGGGGCTCACCGAAGGTGGTGACATGGACGACTCATCCCCGTATGAACCTGTAGCACCTAACCGACACCCTGACGCATTCCGCTTGGCCTCCATCTCTTCAGGGATGCTCACCGTGGCCCCAAAAGGTTTCCAGTGTCTCGACGCCGAGAAACACTGCAACCCCTGTCTTGATGCGGCCAAAGCCTGCAACCTCAACAGCAGCTGCAAGAGGCAACGCTCCGCCTACATCGCTACCTGCAGCAAGGAGGACCCCAACAAGGGTGAAGCGTGCAGCAAGAAGCGCTGCCACAAAGCGCTAAGGTTGTTCCTGGACCGTGTGCCCCCTGAGTTCAGCCACCGGCTGCTCTTCTGCCCCTGTCAGAGTGTGGGCTGCGCCGAACGACGCAGGCAGACAATCGTGCCTGATTGCTCCTATAAAGATAAGGAGAAACCCAACTGTCTGGAGCTGCGGAGGGTCTGCCGCCAGGACTCTCTCTGCAGGTCGAGGCTGGCTGATTACATGGTGAACTGCTGGGTGACTCCGCAGACAGTGAGCACCTGTCCCAACCAAGACAATCATCAAGCCTGCTTGGCCTCCTACGCAAGACTCATCGGGACGGACATGACTCCCAACTACGTCGACAGCAGCTTCTCCAACTGGACCATCTCCCCGTGGTGCACCTGCAAGGGCAGTGGAAACCAAGAAGAGGAATGTCTGAACTTCCTGCGGTACTTTACGGATAACACATGCCTAAGAAACGCCATTCAGGCCTTTGGTTACGGGATAGACAACATGCAGAACAAAAATGTGTCCGTCCCTGGTCCCTCTGCAACGACCAAGACGGGGACGGATTGGCCGGCGGGCACCTCCGAACCGCCCTTTGTCTCCATCCCAAAGTATCCTGAACCAAGAGACGGTGGCCTGGGCAAAACCCGGGGCTTGCCAGAGGATcactctgcctgtctgtgtgccaACGTCTGGGCTCTGCTTCCCGGCCTGGCTTTGGCTCTGGTCCTGGCCCAGCATGCCTTATAGAAGCGCcaggaagagaaaaaagaggTCATCCACCCACAAGCTGATCCCAAAAGCAGAAGGTGTTGTTTCTGAGACTGATATTAAGAAAAGGAGGCATCTCTGGGCAGTTGACATAACAGTAGATGGCATTtatgaaagaggaaaaaaaaaaaaagggaaaaaaaaagaggtcgAAAATATTGAAATTTTACAATTGTGAATGTGTTGTTCATTTGATGTATTGCTAGGGCAGAAAATGACTGTGATGAAGCACGTCGCTTTACAAAGGACCCTTGCTTGGAGAGGCGAGGAAGGTTGTTCTCTGGGAACGACCCCCCTCAGACTGTGACACAAAATCCCTGAAAGACTGAAGCTGATTATTTCAAAGACTTCTGCACTTTTCTCAccaaaggagggagagagggaatgaaCAACATAATTAAAAGAAGACAGGATTGACAGAAAAGAAATTGTTGCGGAGGGAAAAGGAATGAGCAAGAGGTAAAAGGGGTAGAGTGTGAGAGCGaaaggagaatgagagagagagagagagagagagagagagagaaagagacatatTTCTGCTATgagtcacacttttttttgtcttgaatTGGTTCTCGACTTAATCTTCTCTTGGATGAACAGACCACAAATTAATGGGCggggacggggggggggggggatgattaCATTCTGTCTCTTCAACACTAGTGTAAACTCTAAACTGTAAAGCCTACTCAGTGTTCTAAGTGTTGGTATAGTGTCCGTGACCATAATCAATCTACCGTAACAGCTCTTTCATTTGGGTGCTACAGTACAGTAATTTTTCAGCAGGCGGCGAAAAAGATCTAAAGATGGCGACGTAACCCCGCTAACGGTCCTTTGGTCATTTGAGATGTTGTTGTTAACGACTGTGGGTGTGCGCGCCATACGTCCACCTGCACATGTGTATATTTCTGTCTCTATGTATATAAACAAGACTTTTCTTTCATTCAACCAAATGATATCTACGGTACCTTGAATGGACATTACTGTACGCTGCAATGGCTCTGTATCGGTACTAATGAAAGGCCTTCATTATCTGCGTTTATATCTGTCTATTAAGGTTTAATCACAAAGAATGTATACAGGGATGAGATTAAACAAGCTCAAACTGCTTGGAAAGCCCTAA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89955 lncRNA upstream 34023 36429567 ~ 36492695 (+) False trpm3
XR_005639418.1 lncRNA upstream 45407 36477798 ~ 36481311 (+) True LOC120560081
TU89957 lncRNA upstream 268805 36257706 ~ 36257913 (+) True G67263
TU89897 lncRNA upstream 397723 36120895 ~ 36128995 (+) True G67219
TU89894 lncRNA upstream 430595 36094815 ~ 36096123 (+) True G67216
TU90029 lncRNA downstream 281 36606597 ~ 36609794 (+) True G67326
TU90093 lncRNA downstream 405522 37011838 ~ 37030131 (+) True G67373
TU90117 lncRNA downstream 700924 37307240 ~ 37310186 (+) True G67394
TU90263 lncRNA downstream 738146 37344462 ~ 37345076 (+) True G67522
TU90271 lncRNA downstream 777272 37383588 ~ 37383822 (+) True G67530
XM_039802109.1 mRNA upstream 4680 36508463 ~ 36522038 (+) True bco2l
XM_039802116.1 mRNA upstream 49224 36469678 ~ 36477494 (+) True LOC120560019
XM_039803317.1 mRNA upstream 80951 36441132 ~ 36445767 (+) True klf9
XM_039803038.1 mRNA upstream 92516 36284072 ~ 36434202 (+) False trpm3
XM_039804600.1 mRNA downstream 26311 36632627 ~ 36661390 (+) True lzts1
XM_039804599.1 mRNA downstream 36258 36642574 ~ 36661390 (+) False lzts1
XM_039804391.1 mRNA downstream 69083 36675399 ~ 36685936 (+) True smn1
XM_039803255.1 mRNA downstream 85514 36691830 ~ 36770811 (+) True LOC120560592
XM_039804047.1 mRNA downstream 164677 36770993 ~ 36782372 (+) True LOC120561092
TU89972 other upstream 45425 36478252 ~ 36481293 (+) False LOC120560081
unassigned_transcript_269 other upstream 350167 36176479 ~ 36176551 (+) True trnaf-gaa_4
unassigned_transcript_268 other upstream 365247 36161398 ~ 36161471 (+) True trnai-aau_2
TU89790 other upstream 503454 35871423 ~ 36023264 (+) False G67152
TU90405 other downstream 1116945 37723261 ~ 37728658 (+) True LOC120560165
TU90566 other downstream 1755156 38361472 ~ 38407523 (+) False nkx6.3
unassigned_transcript_271 other downstream 1825276 38431592 ~ 38431664 (+) True trnaf-gaa_6
TU90637 other downstream 1989495 38595811 ~ 38598473 (+) False G67824
TU90882 other downstream 2803922 39410238 ~ 39413981 (+) True G68023

Expression Profile