RNA id: XM_026948086.2


Basic Information

Item Value
RNA id XM_026948086.2
length 6778
RNA type mRNA
GC content 0.47
exon number 12
gene id kif26aa
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18728696 ~ 18823168 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaggagGGACCGTTGGACTTCTGCCAGGGTTTCCCAGCAACAGGGGGAGCAAGAATCGCCTCCGATTCAACCTCCCGATGAATTCCCGGCGGTATTCCGCCCCTCTTGCCTGATCCCGGACTCTTGTCATCCTTTGCTCTAAGGAAGAGAGGgaagcaggagagagaaagagtgcagTGCAGGGGAGAGGTGTGGAGTTGAGTGAAGAGGGGAAGACGCGCCCCAATTAGGAACAAGCGCAAAAGGGGAACAGACACGgataaaagaaggaaagaaagtaaATCTTTGGAATTCTTTTCGGACTTTGGCGTAGATCAAAGATGGATATATTTTTTAGAGCTTTTTGATGAGAGGAAGTGATTTCGAGAAGTGAACAGCGATAAAGAAGAGATCTTTACCTTGGAGTTGCCCAGGAATGGTGTATCTCTATGATCCGGAGTCTATCAGATTTGCTTTCCGTGCCAGGAAACTTTTCCCGGCTCACTTTTGTGAGCTTTTCTGACATCTCACTGTCATTTCTGCCTCATTATCCTTTCCTATACCTGAGGTTCATATTTGCTTAAAAATCCGAATCTCGGATGAAATCCTCATCCTCCACACCCCTGGTATCTCCGACGCTCTTCACTCATCCACTTCCTCCTACCTGCAGGAAAGCATGGACcaaaagtgtgaaagtgtggaAGAGCTAAAGGTCTGGAAAAATAAACCTCAGTCATCTGTTTGCTGTTATGAACTCTGAGACGAGACAATGGACTGGAGAGAACTGGCTGCTCAGAAGCTGAACCTCTCCAAACGGAAGAAGCCtcagcctcctcctcctccatccccGCCTGACCCCGATGAACCGTTCTTCTACACGGACGGCTTCAGCGCCGCCCTGCAGCTCTCACCCCCACCTGTCCCGCCATGCCTGCTCAGGGCGGGGTCGAAGGTCAAAGACTGCCCCGGGATGGGCAAGGTTAAAGTAATGGTGCGCATCTGTCCTGCTAAAGGGGAGCAGGACACTTCGGAGTCCATGTCCTTCCTGAAGGTGGACGCTCATAAGAAGCAGCTGACCTTCTGCGAGCCTCCAACTAGCGCTGCAGGTCAGAGACGCTTTTCCTCCACCACGGCCCCAAAGACCTTCAACTTTGATGCAATCTTCACCCAGGATGCCTCACAAGCGGAGGTGTGTTCAGGGACGGTGGCGGAGGTCATTCAGTCTGTCGTCAACGGTGCAGACGGCTGCATCTTCTGTTTCGGACACGCCAACCTCGGTAAAACCTACACCATGATCGGTAAAGACGGTTCCACTCAGAGCCTGGGCGTCGCCCCGTGTGCCATCTCCTGGCTCTTCAAGCTCATcgaggagaggaaagagaaggCTGGTGCTCGGTTCTCTGTGCGCGTTTCGGCCGTGGAGATCAGCGGGAGGGACGAGGTGTTGACGGACCTTCTAGCCGACTTCTCTACAGGAACGTTCCAGGAAGTCCAGGGTGCAGGGGTCTACCTGAAAGAGGACCCCATCTCCGGTTCACAGctcCAGAATCAGAGTGAGCTAAGAGCGTCTACTGCAGAGCGAGCTGCCTTCTTTCTGGACTCGGCTTTAGCATCACGGAGCACAAGCAGACCTGAAAATGCTGAAGAGCAGCCGTGCAACTCTCATATGCTCTTCACCCTCCACGTCACCCAGTACCGCATGGAGAAGAGCGCCAAAGGAGGAATGTCTGGGGGTCGGAGTCGTCTACATCTTCTGGACCTGGGCAGCTGTGAATCCGATGTCACTCGAACAAGGGATGGAGGTGGAGGCCAGTGTCTGTCGCTGGCCGCTCTGGGGAACGTCATCCTGGCTTTAGCCAATGGTGCCAAGCATGTTCCTTATAGGGACAGCAAGCTCACCATGCTACTGAGGGAATCATTGGGCAACATCAACTGCAGAACTACCATGATCGCCCACATCTCGGATTCACCGGCCAGTTTTACAGAGTCACTCTCTACTGTGCAGCTAGCCTCTCGTATTCATCGCATGAGGAAGAAGAAATCCAAGTATGCCTCCAGTTCCTCGGGAGGGGAGAGCTCTTGTGAGGAAGGACAAACCCGACGACCACCTCACTTAAGACCATTTCATCCCAGGACAGTGGCTTTAGACCCAGACCACCCTGCACTTCTGTCCAGTGATCCAGACTACTCCTCCAGCAGTGAACACTCATGTGATACAGTTATCTATGTAGGTCCTGGAGGAGCCCATATTTCTGACCGTGAACTCAGCGACAATGAGGGCCCTCCAGCCTTCGTTCCCATCATTCCTTCACTGAACAAAAAGCGTGCAAAAGAGGCTCCCAAATCAGATGGGGATCATCTAAAGTGCAACACATTTGCAGAGTTACAAGAACGGCTTGAGTGTATTGATGGAAGTGAGAGCACAGCTACTTTTATCGGTGAAGGAAAAGGACCTCAGACAGTCCCTAAGACTCAAGGTGGAGCTGGGAAAGCTACAGATGGGGTTCTTGCATGTACCAAGATGATTAAATCCTCCCTCCAAAAGCCTTCGTACATGGAACACTCCAAAATGCCCTCAGATGGAGCTATATCTGGTCAAACTTCAGCTCAAGAACCCGAGCCAGTTGTACGAGAGAAGGTCTTCCTCGACAAAGGACCTTCATCCTCATTACAAAAGACCTCAAATTTGACCAGTGATAGCACTTTAGCCACAAGGACACCTCCAGTGGGTATGAGCCAGCCAGCCCTCAGACAAGGGGTACCTTATAATCTAAGTAGGAGCCTAATGGAAGTGAGCCACCTCCGAGCAACTTTTCAGAGCAGATGTCTTGAGAGAGATGTTTTAAGAACTACTGTCACTCTACAGCAACCTGTGGAACTAAATGGGGAGGATGAACTAGTGTTTACTGTGGTCGAGGAGCTGCCCACTGGTCTAATTCCAGACAACGGCCGACCCTCTAGCATAATCAGCTTTAACAGCGACTGCTCCCTCTCCCTGCAGGCTATATCCTCTGGATCACGTCCAGTCAGTATAATCAGCAGCATCAATGATGAGTTTGATGCTTATGTATCAAAAGCAGACAGTGCACAAAAAACCCATGCAAGGTCAAAAGAAGAAATGTCATCTGACCACAGCACAGCTCTATCTTCCAAAGGCTCATATTTCAGAAAAACAGCGAATACCGATGCCACATACTTGCCTAGAAGTATTTCATCAAAGGGGGTGACCATACGTGATAATATTTCAACAACGAATATGCCTGGTGCTTTATGTATGGAGTCTTCCTCCCAGCAAAGCACAAACAGCTCCTTCAGTGACAGTGCGATATGTTTTTCAGAGTTAGACTACCAATCAGGGACCTCTGAGAAAATTCCTATAGCCAAGTGCCCACTAACTTTTGATACGAATAAAACATCTTTCAGAGGTCAAAAATCAGTTAAATGTAGTACCACTAGCTCCTCACAGTCAGCACAGATACCTAGTACGAACCAGTCTACTCTCCCGAGAAAAAACAAACCTACCTCATCTGTTGAGCCAAATAGCAGCTTCAACCGAGAATTACAGAGGCAAGGAAGCAGGACAGATGAACACTGGATGCCCAATAGTAGCCAGGTAGATTCAAGAAGTACAGAATTTATCTCTGCAGGCAAGCCACCCAAAACTGGTATGAGTGGAATCCCGTCCAGGAAGACCACAGGCGGGAGCAGCAGCAGTGTACCACGGTCTCCAAAAATGCCTCCATCTTCCTCCTCCCAAAGGGTGGTGGATGGTTGTGAAAAATCCAGTGTTAAAAAAGGAGAGAGCCTGAGCAGAATGCCACAGCTTAGACGAGGAGCCACAACACTTGGCATGATCACGGTGCCTCAAAGCTCCTCAGAGTCCAAGTGGGGCCATGATGCCATGCAAACAAGTACTACGTTGAAATACTCATCCTTAGGGAAGCGGTCAAATGGGCAGAAGAGCAGCTTGCTCCCAATGTCTGGCAGCATGTCACCCCCTGCCCCACCCATCAGAAAATCTAGCCTGGACCAGAAGACACGTGTTTTGGTGTCTCCTAGTGCCTTAAGGTCATTGAGCAATGATGCAGCCAGATCCTCATCATCCAAAGCAACAGTATCTGAAGAGGATTTTGATGTTCGTCTTAGAGGGGAATCTTTTAGCTTTAAATCATTCAGCTTAAAGGCAGGATCCAGTCTTCAGACGCGAGGTGCAAAAGGAGACAATGGAAGATACTTTGGGAGTCTTTTCTCCCTTGAAAGGTGTGACAGCTTGACATCAATTGGATCTAAACCAGGAATGATGAGAGAGAGCAGTAGTGTTAACCTGGGTGGTAATGGCAAGTCTAATAGGATGGTACCAAGACTTGGGGTTACCAGCTCCACCTCTGCACCCCTATCTCCTCCATTGACAAGTACCCCTGGAGTCAGCAAATTAGGGCAGATCAAAGCTAATATAAGTCCTAGAGCCATGGTTGGCAatggaaacaaaacaaagtccTTGTCTAACAATGGTTCCAAACCTTTGAGTGCCACAAAATCATTTTCCACCTCAAGTGTACGGACTGCCAACCTACCTCCAAGTGGAAAAACATCAACTCGTTCAGTTATGGGGGCAAGTGCAAAAGCAGGTAAAGGCACCTTCATGGGCACAAAGCAAGCCATTAGAGCTGCTAATAGCCGGGTCAGTGAACTAGCATCAAGCAGCCCCAAGAAACACATCAAGGGAACCGATGACCAGGCAAGTGCTTCTGGTGATTTTGGATCAACTCCAAAAAGTGAGCTTTTACTGCCTTGTTCATTGCCATCACCGTACAGCAAGATCACTGCTCCTCGACGACCGCAGCGCTACAGCAGCGGCCATGGTAGTGACAACAGCAGCGTTCTTAGTGGGGAGCTTCCCCCAGCCATGGGCCGCACTGCTCTCTTCTACCACAGTGGAGGCAGCAGTGGCTATGAAAGCATGATCAGGGATAGTGAAACCACAGGTAGTGCATCTTCCACCCACGACTCCATGAGCGAGAGCGGAGTGTCTACCTCCAGCCGAACCAAGGTGTCAAAGTCTCCCAAAAAGAGAGCCAATGGCCTGCAGCGGCGGCGGCTGATTCCTGCTCCCCTGCCGGATAATTCCTCTCCTGGCAGGAAGGCTGGAGCTGCAGGCCAGTGGGTGGACCTGCCTCCACTGGGGGGCTCCCTGAAGGATGCCTTTGAGATTAAAGTGTACGAGATAGACGACGTGGAGAGACTGCAGAGATGCAAGGAAGGGATGGTGACTGAGGGCTTGCAGTACTTCAGCGCTCGCCTCAGGATGCTGGAGAAGAGGCAGCAGCAGATCCGGGAGCTCAGGGCCAAGCACGAGAGGCTGAGGAGTGAACTGGAGGACGCCAAGACTCGGCTAATGCTCGACCCCGACAAGTGGACAGGAGAGTTTGACGTGGATCCGGATCTGGACCCGGAGTCGCAGGACTACCTGGAGGCTCTGGTTCAGGCCACGGGAGATCTGGAGTTCTGCGTCAACCTGTGCAAGTCTCGCGTCATGATGGAGACCTGCTTCGAcattctggcaccaacatccccGGGACAGGAGCTGGAGGTGTGATGAGGAGATAACGAGAGGAGAGAAAACATCAGTGGATATTTactgagatatttatttatgatacCAGGAAGTGCcttgatttgaaaaaaaaaatcattgtttcTGATCGGTGCTAGTGCTGAGATCATGACTGTACCTAAGCAAACCCGTTAGCAGATTTCTTTTGGAATATAATAGTTATTTTGCATTGTAatgtagtgtgtaaaaaaataataataatgaaattgaaaaaagggagaaaaagcAATAAGGTAATTTATTGCCAATCCCAGAACCTCCTGTGGAGCTGCCCATCTTTATTAACCTTTCTGTATTGCTtaattattgtgtttattttatttataaccctgccaaatttttattatttaatatattaacgTTAAACCACTAAACCCATCGAGTATTCACGCCCAAATAATTTTGCATCATATCTATAAGAGACATGTAGATCCATATGTGGATTGGCATAATCTGGTTTTGCAGTTATCCCGATTAGTTAATCTCAGATTTCTTAAGAAACGtcgaaaaaacatttttttttattcttcaaaaataattGCCAGTTAGAAATTGgcaataaagaaaacatgcccaaGATTTAATGAATACCAAGCATGAAAGCAGCCTTGTATGTGACACATGACAtcttttaattaacaaattcaTCAATTTATGAAACACTGATTAATATTTTTGCTGCTGGAATAGAACCTGCCTCTAAATACTCGAAGTAATTTTGCTCAGATGTTGCTCAATGagccaaaagacaaaaataatcaagatCGACTCGGTCTATTGGCTTCCTCTCGAGTCTTTGATTCCTGATCATCCTTTATGATCtgtattccaaaaaaaaattcctgtggGAAATGTGTtgccaaatttattaaaaaaaaaaaaaaagcagagtgCACACTAAAAAATTAACACTTAAATTCAAATCAATCCTTATTTAAGAAGCCTCAGGCTTTTAAACCTGAGCGTGAGTTCTCTTTATTTAATGCTTTAGGATTTCTTATTTTTAgctaattatttacattattttatgagtttttaagagtgttttttttttacagatatgTAAGACCTTCTCAGTGTTTCAGCTTTATATTGTACAGTTTTTTAACGCTTTGTAAGAACATGTACAGAACCTTCCATATGCATCAGTACatgattatgaataaaaatttttCGACTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352819 lncRNA downstream 166862 18561597 ~ 18561834 (-) True G297969
TU352816 lncRNA downstream 179083 18549260 ~ 18549613 (-) True G297966
TU352810 lncRNA downstream 195856 18531678 ~ 18532840 (-) True G297960
TU352804 lncRNA downstream 217987 18510487 ~ 18510709 (-) True G297954
XR_004580152.1 lncRNA downstream 302548 18371681 ~ 18426148 (-) True LOC117599783
TU353141 lncRNA upstream 68645 18829534 ~ 18830291 (-) True G298243
TU353202 lncRNA upstream 241451 19002340 ~ 19066932 (-) False G298286
TU353203 lncRNA upstream 241451 19002340 ~ 19066932 (-) True G298286
TU353231 lncRNA upstream 327212 19088101 ~ 19088655 (-) True G298309
TU353274 lncRNA upstream 455749 19216638 ~ 19217239 (-) True G298349
XM_034313846.1 mRNA downstream 59726 18635283 ~ 18668970 (-) False mthfd1a
XM_034313845.1 mRNA downstream 66352 18635283 ~ 18662344 (-) True mthfd1a
XM_034313847.1 mRNA downstream 66353 18635283 ~ 18662343 (-) False mthfd1a
XM_034313858.1 mRNA downstream 95535 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313856.1 mRNA downstream 95535 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313600.1 mRNA upstream 70417 18831306 ~ 18832935 (-) True LOC117599718
XM_034313737.1 mRNA upstream 97288 18858177 ~ 18893330 (-) False ppp4r4
XM_034313736.1 mRNA upstream 97288 18858177 ~ 18893328 (-) True ppp4r4
XM_026948159.2 mRNA upstream 249795 19010684 ~ 19014096 (-) True si:dkey-85n7.8
XM_034313411.1 mRNA upstream 309571 19070460 ~ 19083511 (-) True ubr7
XR_003404857.2 other downstream 622703 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 1013452 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1681886 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 2170769 16555103 ~ 16557927 (-) False G296802
TU353207 other upstream 317115 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 504938 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 630110 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 687504 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 711131 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile