RNA id: XM_034313737.1


Basic Information

Item Value
RNA id XM_034313737.1
length 4308
RNA type mRNA
GC content 0.50
exon number 25
gene id ppp4r4
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18858177 ~ 18893330 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtttgtttgtttgtttggtgttccggtcccacacacacacacacacacacacacacatgcgcgcgcgCGTCTCATTTCTGTTTGCctgatattgatgatgatgatgatgttgatgacgATGACGACGTCGATGACGAACGAACGCGAGCGCGAGGACGACGCCGtggctgactgactgactgactgacgcGCGAGCCGCTGTGATCCGCTCCGCTCTGCTCCGCTCCGCTCGCGCGCTCCTGTGGCATGCGGTCTCCATGGAGACGGCTTTAGTTGGTGCAGTGCGTTTGAAGCGAGTgggttgctgctgctgctgctgctgctgctgtcggGCTAAGCGGCGATTTTCACcgctaaaacaacaacaacagcgggttctctctctttttttagaCCGGAAAGACGTTAAATTAGTGTCTTGTCATTAATATTTAGACGTTAGTTTGAGGTTATTGGTTGTCGCGTGACGTTTTAGTCTCAGTTAATAGAGCAGCAGCAGTGCTATAGGCTGTCTCTCggctgtaatataaatatatttaaatatttttgcactATTTACTAGCTGGGTGAGTTCACTAGTGAGCAAGCtagttatctatctatctaggtAATATCTTGATCATCTTTTTGGACAGGTTAAATCCTATCCTAGTGAGATTTTAGACTAGACCTGGACATGattagatagatatagatatagatatagatatagatagaaaCATTTCCATGAGGATCTTCTGCCTATTGAACAGCAGGTGCAATGGAAAAGCAGCCTCCTGTCATCCATCCAAAGTTCAATCATCTGCTCATCATTTGCTCATCTGAAGGAATTCCTGTTCCAGGCTTGAGATATGACTGTAAAGCCAGTAATTAGATGCTTTGCTTGGTTTTTTGAAGCACCCCACCATCCAAGGAGCATGTTTCTGAACTTCTAGTTCCTCGGTTAACCTGAAGGAGTTTTATTTTTGGCCGTGGGAGGAAGAGAAATCATCATTCCCGACTCCAGGAGCCCGGAGAAGATGCCTGAGGTGtgagaaagaagaggagaaggagacatTAAAACCAGAGCAGATGTTCATCAGCAAGATGACCCTGAGCCAGTCCGGTGTATTTGGACAGATCGATGACCTGCAGGACCTGACGTTCATCGAGAGACCCATACGCAGGAGTCTGAAGACTGCAGAGGAGATTGAGAAGTTAACTGTAGATGAAGATCTGAATGATATCGAGCGAGCGGTCTACCTCCTCAGCTCCGGGCAGGACGTCCAGCGAGCCAGTGTGATTGTGAACCTGCCAAACCTGGTGCGTCAGAACCCAGCGGAGACCTTCAGAAGAGTGGTGCCGAAAGTCAGGGAAGTGCTGCATGTGGCCGGGGCGGATATGCAGCTCGCCGCAGCAGGCTCTTTCCTCACCATCCTCCAGGACGACATCGTCCTCATccagacgcacacacactcaatcctCCAGATCGTCCTCCTCAACTTAGACCACCGGGACACAGTGGTCAGCAGCGCTTGGCTCGAGACTTTGTTATCAGCTATTGATGCTTTACCCAAAGAAACCATCAGACAGGAGaTTCTGAGCCCACTGGTTTCGAAAGCTCAGCTCTCGCAGTCCGTACCGGCTCGACTGGCCAGCTGTCGCATCCTGGGGAAGGTGGCTGCCAAATTTGAGTCATCAGTGGTGAAGAAGGACCTGCTGCCTCTGGTCAGGTCGTTGTGTCAGGACGTGGAGTACGAGGTGCGCTCCTGCATGTGTCGCCAGCTGGAGAACATCGCCAGGGGAATTGGACCGGAACATACGAAGGCTGTGGTGTTGCCGGAGTTGGTGGAGCTGGCACGTGATGAGGGCAGCACCGTGAGACTGGCAGCCTTCGACACCATCATCAACCTCCTGGAGATGTTCGACAACGACGACAGGACACGAGTTATTTTCCCGCTGGTGAAGACGTTCTGTGAGAAGTGCTTTAAAGCTGATGAGGCAGTGCTGGCATCACTGTCCTTCCAGTACGGCAAACTGTGTCATGGCCTCTCAGCGTCCTTCACAGACGAGCAGCACCTCTGGTTCCTGGAGTTCTATAAGAAGCTGTGTTGTCTTGGTCTGCAGCATGAGAACGGCCACTGCGAGAGCCAACCTTACCCTCTGGAACTGGAGAACAAGTACGCTCTGGTGCGCCGCAACTGCGCCTACAATTTCCCAGCCATGATGTTATTTGCTGACCCAAACCACTTCCTGTCTGAGCTGTACCGGACCTTCTCAAGCCTCTGTCACGATCCTGAGATCTCGGTGCGGCGCACGGCTGCTGAGGGGTTCCATGAGgtGGTTAAACTGCTGGGTCCAAATGTGCATTATGTACACAAAGAGCTGATCACCTTACTGCAGGATGACTCATTAGAGGTACTGGATGCTCTACTCAATCATCTCCAGGAGACACTGGAACTGGCAACGTCCAGGGGAGAGGGAGCAGGACCTGAGAGCAAGGTGAACGTTCCTGACCTGGTTCCTGCGCTGGCAGGTGCTGAGCAGAAGGCGGCGTCCTCCCTGCGCTGGCGTGTCCACGAGAAGCTGCTGCAGCGTTACTCCTGTCTGCCCCGCGTCATCTCCGGAGACCACATCTACTTCCGCTTCCTGCAGAGGATGTTCAGCATCATCACCACCAATAATGTTTTACCGGTGCAGAGGGAAGCCGCCCGgacgctgtgtgtgtttctgcgcTACAACCGCAAGCAGGAGCAGAGACAGGAGATCATCAGCAAAATAATGCAGGAGCTTGCTCAAGGGCGGAGTTACTGGAACCGGTTACGGTTTCTGGACCTGTGTGACATCGCTATAGATCTCTTCTCTAAATCCTACTTCTGTAAGCACTTCCTCCTGCAGGCGCTGGAGCTCATCACCGACCCCGTGGCTAACGTCAGGTATAAACTGTGCTACATGCTGCCCAGGCTCAGGTCCACCATCCGGCTACCTGCCGATAAACATCTGCTTCAGCAGCTGGAGTTCTGTGTGAGAAAACTGCTCTGTCGCGAGAAGGACAAAGACGTCGTAGCCACCGTGCGCAAGacagTCCTGGAGTTGGACAAAATGGACATCACAGAACcgTATCATAAAAGGCATGAAAGAGACCTGCTGGACcaaaagaaggagaaggaggagactTTACTGCTGGAAATGGAACTGCTAGAACGACAGCAGAGTGAGGCGAAACTGACGGGAGAGAAGCACAGCGAAAAAAAGAGACGAGACAGCAAAGCAGGACTGTCTGGTACCAAAGGCATGTCAGGGTCCACATCTGGAGCCACCCTGTCCACATCTGCTGGTAAGGAGATGCGGAGAGCCAAACTGGCTCGCAGTCGTTCCCTCAGTAGCCACCCGAGCACTCCCAAAATGTCCAACTCTGATAAAACCCTAAAAGTGAAGGAATCAGGAGGAAGTTGTCCTGGATCAGGGAAGAGCTCCATAATACCAATTAATgATGAAGCCCTGAGACCCCATCATTTCGTGGCGTCCTCGTCCACATCGCTGTCCCAGACTCCCTCCACCTCGTCCATGCCCGTGCTGATCCGCAGCAACACGAGCAGCTCTGTAGAGCAtcgcagcaacagcagcaaagACACACAGTCCAGAAAACTCTCCATACAAAGGAAGTCCAACTCGTTTGGCATGCAGTCTGGAAGGGAATGATGTTCCATTCAGGTGAGGGGACTTTGACACGGAGCCTGAAGGAGAACCAGATGGTGATGTACGTTCGTCTTCAGGACGCTGCGTTCATCCCTCATTCCTCCTCTGGAGCAGAACCAGCTGAACTCTCATGCTCAGGCtgtggaggaggaaaaaaggaggCACCAGGATTCTTCTCACAAGTAAACGTCGATCCATCTCTGCCTTATTCCACACCAAAACTTGTATCATTTGTCCAAAAAAAGACGAAGAGTAATAGGTAatatgatgtattttatttattgagtcatttattttgatttgtttttttttctttttgtattatAGCATGCTTTGCAGAAtctttgttttataatattttccGACTTGCTAGGataaaagtgtgtatttttatgacTGAGCGCCACCTTTAGGAGTTCTGGGACTCTCCATTTCCACCAGTGAGATTGTTCCTGGTGCTTTAAAGCACCCGAGTGATTCACGCCAACACAGAACCCAAACAATAAAGCCCATGGTGAACACCACTCACGACTTTCTGAAGTTTTTGAGCACTTTCTGTATGAATTATTGCAGAGTTTTGCACGGAATTCTGATAGCAggaagtcaagtcaagtcaaattttatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353141 lncRNA downstream 27886 18829534 ~ 18830291 (-) True G298243
TU352819 lncRNA downstream 296343 18561597 ~ 18561834 (-) True G297969
TU352816 lncRNA downstream 308564 18549260 ~ 18549613 (-) True G297966
TU352810 lncRNA downstream 325337 18531678 ~ 18532840 (-) True G297960
TU352804 lncRNA downstream 347468 18510487 ~ 18510709 (-) True G297954
TU353202 lncRNA upstream 109010 19002340 ~ 19066932 (-) False G298286
TU353203 lncRNA upstream 109010 19002340 ~ 19066932 (-) True G298286
TU353231 lncRNA upstream 194771 19088101 ~ 19088655 (-) True G298309
TU353274 lncRNA upstream 323308 19216638 ~ 19217239 (-) True G298349
TU353275 lncRNA upstream 325787 19219117 ~ 19219681 (-) True G298350
XM_034313600.1 mRNA downstream 25242 18831306 ~ 18832935 (-) True LOC117599718
XM_034313438.1 mRNA downstream 35009 18728696 ~ 18823168 (-) True kif26aa
XM_026948086.2 mRNA downstream 97288 18728696 ~ 18760889 (-) False kif26aa
XM_034313846.1 mRNA downstream 189207 18635283 ~ 18668970 (-) False mthfd1a
XM_034313845.1 mRNA downstream 195833 18635283 ~ 18662344 (-) True mthfd1a
XM_026948159.2 mRNA upstream 117354 19010684 ~ 19014096 (-) True si:dkey-85n7.8
XM_034313411.1 mRNA upstream 177130 19070460 ~ 19083511 (-) True ubr7
XM_026948142.2 mRNA upstream 196246 19089576 ~ 19093407 (-) False tmem251
XM_034313488.1 mRNA upstream 196246 19089576 ~ 19093396 (-) True tmem251
XM_034313487.1 mRNA upstream 245756 19139086 ~ 19163575 (-) False chga
XR_003404857.2 other downstream 752184 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 1142933 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1811367 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 2300250 16555103 ~ 16557927 (-) False G296802
TU353207 other upstream 184674 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 372497 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 497669 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 555063 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 578690 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile